HsaINT0007884 @ hg19
Intron Retention
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:19989]
Coordinates
chr9:140069689-140070289:-
Coord C1 exon
chr9:140070160-140070289
Coord A exon
chr9:140069925-140070159
Coord C2 exon
chr9:140069689-140069924
Length
235 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCGGTGACTCTGCACGCAGCCA
3' ss Score
5.23
Exon sequences
Seq C1 exon
GCCATGCGGACCCTCAGTTGGAAGCACACCCTGGGCCTGGTGACCATGGACGTGGAGCTGGCCGACCGCACGCTGTCTGTGGCGGTCACCCCAGTACAGGCGGTGATCTTGCTGTATTTTCAGGACCAAG
Seq A exon
GTGAGCCCACCAGCCCCTAGCTGGCCTGCCCCGGCCACACGGCCCAGCTGTGGGTGAGGGGCTGTTCCCCAGTGAGGGTGTGGTTTGGGGCAGCTGCGCCAGCAGGCGGCACCCTTCCCTTTCCCACGGGCAAGGCAGGGTGGCCCGGGAGCCCCCCGACCTCTCGGCTGACGGGAGGCAGGGGAGGTGCAGCCCGTGCCCAGGCTGCCCAGCGTCCCGGTGACTCTGCACGCAG
Seq C2 exon
CCAGCTGGACCCTGGAGGAACTGAGCAAGGCGGTGAAGATGCCCGTGGCGCTGCTGCGGCGGCGGATGTCCGTGTGGCTGCAGCAGGGTGTGCTGCGTGAGGAGCCCCCCGGCACCTTCTCTGTCATTGAGGAGGAGCGGCCTCAGGACCGGGACAACATGGTGCTCATTGACAGTGACGACGAGAGCGACTCCGGCATGGCCTCCCAGGCCGACCAGAAGGAGGAGGAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248-ANAPC2:NM_013366:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=NA C2=0.326
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(11.3=100)
A:
NA
C2:
PF0088817=Cullin=PD(16.0=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTCAGTTGGAAGCACAC
R:
CGTCGTCACTGTCAATGAGCA
Band lengths:
305-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)