BtaINT0010847 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61978118-61979767:+
Coord C1 exon
chr19:61978118-61978237
Coord A exon
chr19:61978238-61979568
Coord C2 exon
chr19:61979569-61979767
Length
1331 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
AGTTTATCACATGGTTACAGATC
3' ss Score
4.26
Exon sequences
Seq C1 exon
ATCTTTGCAGAGACCTTGAAAACTCTTCTGACCAGGGCATAATGAATTTTGGTGTTTCCATGACAACTCTAAATGAAGTATTCTTGAACCTAAAAGGCAGATCAGCAATTAATGGGCCAG
Seq A exon
GTATAAAAATGTGTGTCTAGCAGGAAATTAAGGAAAAAGAAAATGACCATGTGTTAATTTATATTTATAGATTTTTCTGTGGAATTCTAACTAGAAGGTGAATTAGGTATAAAGGGGGCCATCCACCTTTTAAGGTATCGTAAATGTTTTATGGTAACGTCATCAGGCTTGGGGCCAGACCAGTCTCCTTGTGATGCTGTGTGCCCCCTGTCGGGTCTAACCTCTTCCCTCTGCAGTGCCCACCACTATCCCTCAGTAGCTCTCTGCTAACGTCCTAAATCCAGGTTTGTCTCTTTCTTGCCATTCCCTGTAAGAATGTTCTCTTGCCTAGCTAACCAACTCATTCTAATTAACATATTCATGGCAGATAATTAAATAAGATGTTATCTTCTCTTACTTTATAGTAATACTAATTTGAAGAATTTAGAAGCCTACTATGTGCCAGACATAATGCTCAACTGCTGGATTCTGTTGGGTTTTTTTTAAACCTGATTTTATTTTTACTATTTAAAAGTATTTATTTATCTATGGCTGCACGGGGTCTTTTTTGCTGTGTGTGGGCTTTGTCTAGTTGTGGCGAGAGGGGCCTGCTCTCCAGCTGTGGGGCACGGGCTTCTTCTTGGGGCAGCTTCTCTTGTTGCAAAGCATGGGCTTTGGGGCACACAGGCTTGATTGCCCCAAAGCCTGTGGGATCTTCTCAGATTGGGGATCGAACCCGTGTTCTCTGCATTCCAAGGCAGAGTCTTAATCACTGGCCCACCGGGGAAACCCAGGATTCTGTTGTTCTTAATCCCCATAAGTTATTTTATTTATATTATGACGTAGGTGAGAAAGTGAGATTTACACATCTGAGTGATTAGCCGCAGTCATACGGCTCACGTGTGGTGTGGGTGGGACTCAAACAGGGATCTTCATGGACTTTCTCTTACTTAACACCACGGTGTCTTGAAAAAGTTACTGAATGTCAACCGTCGGTGATAAACTGATCCTCTGGAGGAGACGAAGGAAGGAGAAGAATTTTCAGGAAATTCGGCTGTAGACATTTATCATGGTGTTTTTGCATAAGACACGCTCTGCACAAATCCCTCAGTGAAGAGCTTTCTCTACAGATACGAATGAAGTCATGCACTCTAGATGCCTAACCCATGCCCTCAAACTGACTGCATCCATTACATTTGTTTGAAGGAAAGATTTGAATGTAAAAGTTACAGCTATCAGCAGTCGATGTGTTAGAAGTGTTGCTTCAAATAGTCTAACATCATTTCTCAAAGTTTCTAAAGAGAAAATGTAAGTAAAGTAACCTCTTGTAATAGTTTATCACATGGTTACAG
Seq C2 exon
ATCCCGGTGTCGGGGGCCTGGCGGAAATCGACGTGACCCGAGACCCTGGAGCGGAGTCTGAAGCCCAGCAGGCTCTTGGTTCCCTTCCGGAAGTGAAACAGGCCGCCAGCTCTGCAGCTCTGTGGAGACGCCAAGTCTGTGCGGTGGCGAGACTCCGCTTCTTAAAGCTGAGGAATGAGAGGAAGATTTTCCTGTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCAGAGACCTTGAAAACTCT
R:
GAAAATCTTCCTCTCATTCCTCAGCT
Band lengths:
310-1641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development