HsaINT0000421 @ hg19
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]
Coordinates
chr17:67183822-67186618:-
Coord C1 exon
chr17:67186499-67186618
Coord A exon
chr17:67184021-67186498
Coord C2 exon
chr17:67183822-67184020
Length
2478 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
GTTTTATTACATGATTGTAGATT
3' ss Score
5.46
Exon sequences
Seq C1 exon
ATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATGCTGTTTCAGTGACATCTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAG
Seq A exon
GTATAAAAATGTGTGTCTAGCAGAAAATTAAGAAAAAAAAGAGAAGAGAAAAAGATGATGTTCTAATTCATATTTGTAGATTTTTATGTGGATTTCTACCTATAATATGCATTAGATAGAAAATAGCATTGTCCACTAGATAGAAAATACTAGCATTGTCCAGTATTATAATCATTTTATATCGAGTATAATCAGCCTTGGTGCTAGGCAAATTGCTTTCCAACATCTGTCTGCTTCCCATGTCAGTGACAGGCACATCTCTTTGCAATGACCACTTCTTCCTTATTATCAAAAGCTCTCTGCTATAGCGATGAATTCTGCTATTGCCTCTTACTTGCCATTCCTTATAAAAATGTGCTCTTAATTAGCTAATAAACTAATTCTAATTAATGTATTAATAAGAAGTAATAAAATAAGATGTTATTTCCTTAGTTTACTTTGTAATAAAAATTAGAAGAATTTAGGAGGCTACTATACATAGACCAACGGAACAAGTTAGAGAACCCAGCAATAAAGCCACAAACCTACAGTCATCTGATCTTCAACAAAGCCAGTGAAAACAAACAATGGGGAAATGACTCCCTATTCAATAAATGGTGCTGGGATAACTGGCTAGCCACAGGCAGAAGATTGAAACTAGAGCCCTACCTTTCACCCTATACAAAAATAAACTCAAGATGGATTAAATACTTAAATGTAAAACCTAAGACTATAAAAACCTGAGAAGAAAACCTACAAAATACCATTCTGGACATTGGTCCTGGCAAAGACTTCATGATGAAGACTCCAAAAGCAATTGTAACAAAAAGAAAAATTGACAAGTGAGACCTAATTAAACTAAAGAGCATCTGCACAGCAAAAGAAACTATCAACAGAGTAAACAGACAACATACAGAATGGGAGAAAATATTTGCAAACTATGCACCCAACAAAGGTATAATATCCAGAATCTATAAGGAGCTTAAATCAGTAAGCCAAAAACAACCCCATTAAAAAATGGACAAAGGACATGAACAGATACTTCTCAAAAGAATACATACATGCAATCAACAAGCATATCAAAAATGCTCTGTATCATGAATGAATAGGGAAATGCAGATCAAAACCACGAGATACCATCTCACACCAGTCAAAATAGCTATTATTAAAAAGTAAAAAAATAACAGATGCTGATGAGGTTGTGGAGAAAAGGGAATGATTATGCCCTGTTGGTGGGAATGTAAATTAGTTCAGCCACTGCAGAAAGCAGTCTAGAGATTTCTCAAAGAACTTTAAATAGAACTATCATTTGACCCAGCAATCCCATTACTGAGTATATAGCCAAAGGTATATAAATCATTCTGTCATAAAGACATATACAGATACGTTCATTGCAGCACTATGCACAATAGCAGAGACATGGAATCAACCTAGATGCCCATCAGTGGTGGACTGGATAAAGAAAAGGTGTTACATGTACACTATGTAATACCACGCAACCATAAAGAATGAGATCATGTCCTTTGCAGCAACATGGAGTAAGCTGGAAGCCATTATCCTAAAGAAATTAACACAGGAACAGAAAACCAAATACCATATGTTCTCACTTACAAGTGAGAAGTAAACATTGAATACACACGAATACAAAGAAGAGAACAACAGACACCAGGGCCTACTTAAGTGTGGAGGATGAGAATTGAAAAATGACCTAGTGGGTATTATGCTGATTACCTGGATGACAAAATTGTCTGTACACCAAACCCCCAAATCCCCATGACACGCAATTTACTCATGTAACAAGCCTGCACCTAAATGACACACAGTTTACCCATGTAGCAAGCCTGCACCAAAAATAAAAATTGGAAAGAAAAAAAAGAATTTAGGAGGCTACTAGATACCAGCCATTGTACTCAGTCCTTGAATTATATTGTTTTAAATTCCCATAATAACATCAAGCTGCCCATGAGAAAACTGATATTTGAAGTTGTGTGATTAGCCAAAATTATACAGTAAATGTGTGGTATATGTGGGACTCAAACAGGAGGCCTTTCCATGAACTTTCCATCATTTGAAAGCACAATGTCTTGAACTCGTTACTGAGATGTCAATCATCAGTGTTGAACTAATCCTGTAGGGGAAATTCCAGATGACAGAGGAGGCCTGTTGGAAACTCAGCTACATAAATTTGTCTTTGTGCTTCTGCATAAAACTTGCTCTGCAAAAGTATCCATTAGTGAAGAGCTACTGTTATTGGTATGAAAGAATAAATGCTTGTTAGGAAGCCTTAATCATCCTCAAAAATTAATTTACTGTCTCATTGGAACTGAATCCATTACATATGTTTGAAGGAAAGATTTTTAACGTAAATTTTGATTATGGATATCAGTAGCTTAACTTGTTGGAAGTGCTGTTTCAAATAGTCTAACATCATTTTCAAAGTTTTTAAAGAGAAAGTTCAGATAACATAGCCTATTAAAATGTTTTATTACATGATTGTAG
Seq C2 exon
ATTTTGACATTGGGAAACAAGAGAAAATACATGTGACAAGAAATACTGGAGATGAGTCTGAAATGGAACAGGTTCTTTGTTCTCTTCCTGAAACAAGAAAGGCTGTCAGTAGTGCAGCTCTCTGGAGACGACAAATCTATGCAGTGGCAACACTTCGCTTCTTAAAGTTAAGGCGTGAAAGGAGAGCTCTTTTGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263-ABCA10:NM_080282:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(0.8=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)