HsaINT0000421 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69187681-69190477:-
Coord C1 exon
chr17:69190358-69190477
Coord A exon
chr17:69187880-69190357
Coord C2 exon
chr17:69187681-69187879
Length
2478 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
GTTTTATTACATGATTGTAGATT
3' ss Score
5.46
Exon sequences
Seq C1 exon
ATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATGCTGTTTCAGTGACATCTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAG
Seq A exon
GTATAAAAATGTGTGTCTAGCAGAAAATTAAGAAAAAAAAGAGAAGAGAAAAAGATGATGTTCTAATTCATATTTGTAGATTTTTATGTGGATTTCTACCTATAATATGCATTAGATAGAAAATAGCATTGTCCACTAGATAGAAAATACTAGCATTGTCCAGTATTATAATCATTTTATATCGAGTATAATCAGCCTTGGTGCTAGGCAAATTGCTTTCCAACATCTGTCTGCTTCCCATGTCAGTGACAGGCACATCTCTTTGCAATGACCACTTCTTCCTTATTATCAAAAGCTCTCTGCTATAGCGATGAATTCTGCTATTGCCTCTTACTTGCCATTCCTTATAAAAATGTGCTCTTAATTAGCTAATAAACTAATTCTAATTAATGTATTAATAAGAAGTAATAAAATAAGATGTTATTTCCTTAGTTTACTTTGTAATAAAAATTAGAAGAATTTAGGAGGCTACTATACATAGACCAACGGAACAAGTTAGAGAACCCAGCAATAAAGCCACAAACCTACAGTCATCTGATCTTCAACAAAGCCAGTGAAAACAAACAATGGGGAAATGACTCCCTATTCAATAAATGGTGCTGGGATAACTGGCTAGCCACAGGCAGAAGATTGAAACTAGAGCCCTACCTTTCACCCTATACAAAAATAAACTCAAGATGGATTAAATACTTAAATGTAAAACCTAAGACTATAAAAACCTGAGAAGAAAACCTACAAAATACCATTCTGGACATTGGTCCTGGCAAAGACTTCATGATGAAGACTCCAAAAGCAATTGTAACAAAAAGAAAAATTGACAAGTGAGACCTAATTAAACTAAAGAGCATCTGCACAGCAAAAGAAACTATCAACAGAGTAAACAGACAACATACAGAATGGGAGAAAATATTTGCAAACTATGCACCCAACAAAGGTATAATATCCAGAATCTATAAGGAGCTTAAATCAGTAAGCCAAAAACAACCCCATTAAAAAATGGACAAAGGACATGAACAGATACTTCTCAAAAGAATACATACATGCAATCAACAAGCATATCAAAAATGCTCTGTATCATGAATGAATAGGGAAATGCAGATCAAAACCACGAGATACCATCTCACACCAGTCAAAATAGCTATTATTAAAAAGTAAAAAAATAACAGATGCTGATGAGGTTGTGGAGAAAAGGGAATGATTATGCCCTGTTGGTGGGAATGTAAATTAGTTCAGCCACTGCAGAAAGCAGTCTAGAGATTTCTCAAAGAACTTTAAATAGAACTATCATTTGACCCAGCAATCCCATTACTGAGTATATAGCCAAAGGTATATAAATCATTCTGTCATAAAGACATATACAGATACGTTCATTGCAGCACTATGCACAATAGCAGAGACATGGAATCAACCTAGATGCCCATCAGTGGTGGACTGGATAAAGAAAAGGTGTTACATGTACACTATGTAATACCACGCAACCATAAAGAATGAGATCATGTCCTTTGCAGCAACATGGAGTAAGCTGGAAGCCATTATCCTAAAGAAATTAACACAGGAACAGAAAACCAAATACCATATGTTCTCACTTACAAGTGAGAAGTAAACATTGAATACACACGAATACAAAGAAGAGAACAACAGACACCAGGGCCTACTTAAGTGTGGAGGATGAGAATTGAAAAATGACCTAGTGGGTATTATGCTGATTACCTGGATGACAAAATTGTCTGTACACCAAACCCCCAAATCCCCATGACACGCAATTTACTCATGTAACAAGCCTGCACCTAAATGACACACAGTTTACCCATGTAGCAAGCCTGCACCAAAAATAAAAATTGGAAAGAAAAAAAAGAATTTAGGAGGCTACTAGATACCAGCCATTGTACTCAGTCCTTGAATTATATTGTTTTAAATTCCCATAATAACATCAAGCTGCCCATGAGAAAACTGATATTTGAAGTTGTGTGATTAGCCAAAATTATACAGTAAATGTGTGGTATATGTGGGACTCAAACAGGAGGCCTTTCCATGAACTTTCCATCATTTGAAAGCACAATGTCTTGAACTCGTTACTGAGATGTCAATCATCAGTGTTGAACTAATCCTGTAGGGGAAATTCCAGATGACAGAGGAGGCCTGTTGGAAACTCAGCTACATAAATTTGTCTTTGTGCTTCTGCATAAAACTTGCTCTGCAAAAGTATCCATTAGTGAAGAGCTACTGTTATTGGTATGAAAGAATAAATGCTTGTTAGGAAGCCTTAATCATCCTCAAAAATTAATTTACTGTCTCATTGGAACTGAATCCATTACATATGTTTGAAGGAAAGATTTTTAACGTAAATTTTGATTATGGATATCAGTAGCTTAACTTGTTGGAAGTGCTGTTTCAAATAGTCTAACATCATTTTCAAAGTTTTTAAAGAGAAAGTTCAGATAACATAGCCTATTAAAATGTTTTATTACATGATTGTAG
Seq C2 exon
ATTTTGACATTGGGAAACAAGAGAAAATACATGTGACAAGAAATACTGGAGATGAGTCTGAAATGGAACAGGTTCTTTGTTCTCTTCCTGAAACAAGAAAGGCTGTCAGTAGTGCAGCTCTCTGGAGACGACAAATCTATGCAGTGGCAACACTTCGCTTCTTAAAGTTAAGGCGTGAAAGGAGAGCTCTTTTGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(0.8=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development