BtaINT0010864 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:62002538-62002778:+
Coord C1 exon
chr19:62002538-62002613
Coord A exon
chr19:62002614-62002683
Coord C2 exon
chr19:62002684-62002778
Length
70 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GCGGCTCCTCTCTGTTGCAGCTG
3' ss Score
10.1
Exon sequences
Seq C1 exon
GCTGGCGGACGCGCTGAAGCTACAGGACCAGATGGCGCTCCCCGCCAAGGCCTTACCCGAGGGGGCCAAGAGAAAG
Seq A exon
GTAGGACCAGGCCGCCCCCCGCCCCCGCGCGCACCCAGGCCGGCGCCGACGCGGCTCCTCTCTGTTGCAG
Seq C2 exon
CTGAGCTTCGCGCTGAGCGTCCTGGGGAGCCCGGCTCTGCTGCTCCTAGACGAGCCGACCACAGGGATGGACCCCGAGGGGCAGCTGCAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.0=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(13.6=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAAGCTACAGGACCAGA
R:
CACATCTGCAGCTGCCCC
Band lengths:
160-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development