RnoINT0010461 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98325158-98325422:-
Coord C1 exon
chr10:98325347-98325422
Coord A exon
chr10:98325253-98325346
Coord C2 exon
chr10:98325158-98325252
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
TGCTATCCCTCTCATTGCAGCTG
3' ss Score
10.51
Exon sequences
Seq C1 exon
GTTGGCAGATGCACTCAAGCTGCAGGACCAGCTGAAGTCTCCGGTGAAGACGCTGTCAGAGGGAGTGAAGAGAAAG
Seq A exon
GTTTGGGCAGGGCCCCGGGAGAAGGGCTTCGAGCAAACCTCAGGGGTGGGGCACACGTGAGGTGATGCCACATGTGCTATCCCTCTCATTGCAG
Seq C2 exon
CTGTGCTTTGTGCTGAGCATCCTGGGAAACCCTTCTGTGGTGCTTCTGGATGAGCCATCCACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.7=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(14.2=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCAGATGCACTCAAGCTG
R:
ACATTTGCTGCTGCCCCTC
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]