BtaINT0011064 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49622514-49625940:+
Coord C1 exon
chr3:49622514-49622579
Coord A exon
chr3:49622580-49625850
Coord C2 exon
chr3:49625851-49625940
Length
3271 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTGGCTTTTGGTTTGTGCAGGCT
3' ss Score
6.26
Exon sequences
Seq C1 exon
GGGACTATGGAACCCCACTTCCTTGGTACTTCCTTCTACAAGAGTCTTACTGGCTAGGTGGTGAAG
Seq A exon
GTGAGTTGTTTAAATTTTTTTTTTAATTAAGAAAGAAAAACAAATGTTTGAAATTAACTCCTTTGTCTCTATATTGGATATGTGTGCATTGTAGAGGTGGTTCTTACATGAAATGTGAGATTCCTGATTAGTTAGCTGTCTGCTGGGGGCTCTGTTCCTTAGTGCATCATCACGGCCTCTGGGAGCCCCTGTTTTGTGAGTGACTGGACCAGGGTGATGGCTGAGCATTGATAAGCCCTTGCATCCTGGTTGTGCCCAGTGGATTAAAGTGCACGCTTAAAAGAAAGCCAGACCACTTGAGGGTGAAAACGAGGTTTGCAACTTCTCAATTTAAAGCAAACAGATCTATAGAATCTGGAAAAGAAAGTTGTGGTATATATACACAGTGTATATATTACTCAGCTATTAAAAAGAACACATTTGAGTCATTTCTAATGAGGTGGATGAAACAGGAGCCTATTATACAGAGTGAAGTAAGTCAGAAAGAAAAACACCAATACAGTATATTAACACATATATATGGAATTTAGAAAGATGATAATGACGACCTTATGTACAAGACAGCAAAAGAGACATAAAGAACAGACTTTTGGACTCTGTGGGAGAAGGCAAGGGGGGGGATTATTTGAGAGAATAGCACTGAAACATGTATATTACCATATGTCAAATAGATGACCAGTTCAAGTTCAACGCATGAAACAGGGCATTCAAAGCCGGTACACTGGGACAACCCAGAGGGATGAGATGGGGAGGGAGGTGGGAGGGGGGTTCAGGACCAGGGGACAATGTGCACCTGTGGCTGATTCAGATCGATGTGTGGCAAAAAACCGCCACAATATTGTAAAGTAATTAACCTCCAATTAAAATAATTAATTAAATAATAAAGCAGACAGATCTAGAGAATCACAGAGAAATCCATCTTCTGCTGTGTCTCCTCGTGTGGTTTTTTAGTCCTCTCCACTTTTTCAAATATAAATACATTTATTTTCCCAAAGCAATAAGTTTATTTTCCTGGCATCCAGAGGCTGGGGCAGACTCCCAGATTCCCTTAGCGCTGGTCTTTCTTGTGACTGGAAAAGAGGGTTAAAAGGACATTTGCCCAGAATGCATCATAAGTAAAATTTACCTTTTTTCCTGAACAGGACAGAAGCCAAGGGAGAGTTCTAGAAGTGGGGGGTGGAGAGGGGAGCTGTGTACTATAGACTCCTGTGAGGGATGAGGAGATAGAGAAATTCCAGAGCTGAGAGCTGGAGGCGCCCCTGGAGCTAGGAGTCTCTGGAAGCAAAGGAGATGCTTTCCAATCTGCTTGTTCCTTACCTACTTGCCCTTTACTTTGTATTATTGGGCCTGGGCCAGGATTTAGCCTTTAAGCACTAAGATAAATGTTTGTTTTCTCTAGGGGATTAGTCTAGGACCTTTAAAAGGTTTGCAGTGGGGGTTGCCTTTTTTTTTAATGATTCAAACAACATTTCAACAGCTCAGTGTTTTGTGGGTTTTTTTCCCATTATGTTGCCTTGTCTGTCTTTCTTGTCTATCTAGTAAACTTTTAAACTTCTACTATAATAAACTTATAACCTATCATAAATGGGAATTTTCAACACAGAAGTCTGTTCCTGAAATGTTTCTAATTTCAGTCAGTATCACGACTTTGTGGGCTTGTTTTTCCCTCTATAATCTCAACAGATATGCTGCCTCTAAAAAGAAAAATTTTAAGACAAATGTGCTCCTTCAAAAATGAGTCACATGTATTTTTGCCAACAGAAGCTAAATACTTTTCACCTGTCTCACAAGCTAGACTGAAATAGATTCCTAAATTTCTCTAAAATTAGAAAAGAGCTGAGTTTTTCCACCTAATCTGCTCCTTTCATAGATGAAGACATGGAGCCCAAGAGACATCTAATGTCTAACCCAGTTCCTGTTGGCCATTTTGGACTAAATCTGGAATTGGGACATGTATTTCCTGGCAAGGAACTCACTCCAGTGACTAGGAGAATATTTCCTCCTGCTATTTTATTATTATACATTTAATGCAGTATGATGGCTAGTAAAGTGATCAAAGGGATTGTGGGCAATAGATTTAAAAGTCCTTCAGGAAACAGCAGTGCCAGCGGGGGCCGGTCCCTGAGCAGGGCCCAGTACGCATCACCCACCACACAGCCTGCGGTCTACAGACAGCAGTGTGGGCGGAGAGGCCTCGGCCGACTGCAGCATTAGGACACCAGCCTGCTCGCGGATGTGCACCTGTAGCCAGGGCCTTTAGATGCTTGGCGACGACGGTTTCCTCCCGCCTCTGCTTTCTTCTCTAGCTGGCTTGTGTTTCTGCTTCTATTCCCCTTTCAGGGTGTTGTGATGTCCTTTTTTTTCAGGAAATGAATTTATTTTTTGTGTTGGAGAATAGTTGCTCTACAGCGTTGTGTTAGTTTCTAAGTGCAGCAAAGCAAGTCAGCCACATGTGTGTATATGTATCCCCTCTTCCTTGGATTTCCTTCCCGTTTAGATTACCACAGAGCACTGAGTAGAGTTCCCTGTGCTGTATAATGTGTTCTCATTAGTTATCTATTTTGTCCTTTGAAACCAAAGGTGAAGTTTACAAAAAGCGCCTCTGTGAGGGCTAGGGGTATGGGTGTTGTGAGTGTCAGGGTGTGTGTGAGTGTGAGAACATGTGCGTGAGTGGTTACACCACAATTTGTGTAAGCCTGTCCAGTAGCCAGGCTCACCTCTGGTGTTAATCCCCAAATACTTGAATGCCCATGAAAGTATTGACAGATTTCTCAGGTAAACAATGTCTCAGTCTGCCTGCCCATCATATCAGCTTGAATGGACTTTTACTGGAGATTCACCATGACTTTGACGTGTTTTGGATTGGAGTGAAAAGTACCATTAGTGAGCTGAAAAAAAATTAACCCATTTAAAAGTCAATCCTGGTTTTAATTTTTTTTTAAATCACAATTTCTGGCACTGTGGGCTCCACCTGAGGATAAGTGAAACTTCTAGTACAAAATTCCCTCTGTGCTCACCAACAGCTGCCAAATCAGACCTCTGGGAAGCACCCCCTCTCCCCAGACCCTGTGGGAACTTCACAGCCCCACAGGTCAGAGGCTGGCAGAGCCCTCCTCAGGGCTGGTCCTAGTAATGTCAACCTGGCCTTCTGAGGGAACTGTGCTTTCCAGCTATGGTAGGAAACTCTGCTCCCCTCTTCTTCTCTTGTTTCCTGTCTTTCCTGATTCTCAGCCTTCACCAGGAGAGTAACAGTGGCTTTTGGTTTGTGCAG
Seq C2 exon
GCTGTTCAACCAGAGAAGAAAGAGCCTTGGAAAAGACAGAACCAATAACAGAGGAAATGGAGGACCCAGAATACCCAGAAGGAATAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010:ENSBTAT00000023982:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.548
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]