GgaINT0034967 @ galGal4
Intron Retention
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12641106-12645259:+
Coord C1 exon
chr8:12641106-12641168
Coord A exon
chr8:12641169-12645177
Coord C2 exon
chr8:12645178-12645259
Length
4009 bp
Sequences
Splice sites
5' ss Seq
CCAGAAATC
5' ss Score
-11.98
3' ss Seq
TTATATAGAAAAAACTTCAGAGT
3' ss Score
-1.96
Exon sequences
Seq C1 exon
GGGAATATGGCCTACCACAGCCTTGGTATTTCCCTTTGCAGGAGTCTTACTGGCTTGGTTCCA
Seq A exon
GAAATCCCAAAGCTGAAAAAACAGCAACAGCTGATGGTGAGTTCTTTTAAAACTTTGGTATTTAGAAATAATTTGAAAACCGCTAATCTGCTTAGAGGTGGCTGTACAACAACATTTCCAATACAGAAATTGCAGCAAAGATTAGGGACAGCCATGTAATGGGAATCTCAGTAGGTGCCTTTGAACTTCTAGTGGCCTGCTATTATAAGGGTTGAGAGAGGTGAGTCAGTATTCCATCAGAGAGCCTTTAAAGCTTGGGTTAACAAGCATCATCAACCTCCCACTCTCTAACTAAAACCTTCTGAGACATTCGAGGAGTTCTTATTGCCCAACATAGCATTTGTTAAATTAGTTAGAATGAAACAGTGATGATCTTGTTTATGCTGAGACTCCCACATCTATCTAAACCTGATTATTTTCTAATTGAAACTAATATAACTCTGTTTCCTTTTGATTTGTAAGCAAGATCAAAACTGATGTTACCCTTGGACCAATTTGAGTGAGTCCTGAAGTCCTGCTTTTGCACTTTTTTTCTGTGCACTTATACTGACATAGTAAATAGGTAATATTTTGTAGGTGATTATATTCAAACAGAAACTAATGTATAAAGATGACTCATGTCCGGAAAAGAGGCTTGCTGAAGATAGTATTTTGAAACCTGTCTTAAATTGACAAGTAACAGTGAAATTAATCAAAATCTCAGACGAAAAATAATTCCTTCAGTCTTTTCATTACTATATTCATTCTTCATCGATTCAAACTACTGTCAAGACAGCCTCATTTCAAGGGAGTTAGTTAATCCTATCTGTAAATATGCTGATAATACATCCACAGCTCATGTTCCCTCAGAAAAGGGGAGGCCATAACGTTGTTCTCTTTGAAGAGGCTTTGTCTTATTGTACGTTCTGAGACAATGAACAAGTTTTCCTTTAGACTTTCTGTGAGGTTATTCAGAGTGATAGAGGCTTGTCTAGGTCATTATAGAGTCTGTTAACTGTTTGTGCTTTGCAACTGTTGTCCACCAGTTTAGAATATGTGTAGGGAGGAGGAGGAAAGAACTGAAGGAAGACTTGGAACATGTCATGTTTATGGATGAATGACAAACTTTTCAAAGTACAGATGCCATCCAATATATCTCATTGCCTTTCTGTGGAATTTGGACATATCTTGCACAAGAGCTCCTCAAGTATCTAAAATTTGAAGCATAGTTGCTTGCAGGGCTTTACCATTACTCAGCTTAACCTAAATTTAGTTAAAAAACAAATTTTTTGCATAACTTACTGACTCTTAAGTTCTGTGTGTTGTTAATGTATTTCCAGTACAAGAGAAACATGATTTTTTTAGGCTTGAAAATACCAAAAGATTCAGTTGCTCAGGTAAGTCTACAACAGAAAAGCTAGTGGCCTCTTTGTTATTACCAGTTTTTACTATTATTTTTCTTATTGCTTAAAAAAAAAAAAAAACAATTTGCCTAAGTAAAGCCTAGAGTTTATTTTGTGAGTGAAGTTATAACAGATAGCTGAGCTGACCTGACAGTTCATTGTTGAAAAAAAAAAAAATGGCACAGTCTTGTCATCTCTTCTGCAGATCTCATCCTCGTTCTGTTGATGCTATCGTCAGTACCTAGTAAGGTTATAAGGTAGATCCTTTTTGGAAAGCAAGTATCTGAAGGACAAATTTATAGTAAATAAAGAACATGGATTAACCAAGAGCAAATCATGCCTAACCAATTTGTTTTTCTTCTGTGATGAAAACACTGGATTACTGAAGACAACGAAAGCATTGGATGTCATCAAACCTTTAGCAATGCCTTTAGTGTGAATTCCTGTAGCATTCTGATAGCCAGATTAGTTGGATATAGGCTGCTTGGGTGAATAATAAAGTGAGTAGAAATTTGTCTTGACTGTTGGGCCCAAAGGAGTGTGAACAGCAGTACAAAGCCTAGCTGAGAACCAGTCAGTGGCATCCTCATGGACTGATATTGAGGGTCGATACTGTTCAATGTCTTCAAATTTGAGTGATGGAGAGAGTGCACCCTGAGAAAGTTTGTGGAAGATACCAAGTTGGAGGAAACAGTGGAGCACAGGGCACTATTTCAGAGGGACCAAAGCAGGCTGCAGAAATGTCTTTGTAGAAACCTTACAGAGTTCAACAAAGTAAATGCATAATACTGTATCTGGGATGGAGTAACCCCATACAACAGTGCAGAGAGTTCACAACTTGGCTGGCAGGTATCTTTGTAGGCCAGGTCTGGTGGACAACATGTTGAACACGAGCCATCAAGTGTGCCCCTGTAGCCAAGAAGACCAACTGCATCCTCAACTTCATTAGCAATAGTGTAGTCAGTAGTTCAATGGAAATGATCATTGTAATCTAGTCAGAGTTTGTGACAGTGTACTTGGAATACCAAGTTGTCCATTTGGGCATCCCCAGTGAAAGGAAGACATTTAGCTAATGGAGAGAGCTCAACAAAGAGCCACCAAGTTAATTAGAACCTGCAGCACATTACAAATGAGGAGGTGCTGAGAGATCTGGATCTGCTCAGCCTTAAGAGAGAAGGATAAGAGAGAGCCAGACTTCTCAGAAGTGCCCAGCAGAAGGATGAAAGGCAATGGATAGAGTTGGAAAACAAGAATTCTGATTCAATACAAGAAAAAAAAATCTATACTGTGAAGGTACTGTCAAACACTGGAACAGGTTGCCCAAAGAGGCTGTAAAATCTCTGTTCTTTGAGATAGCTATCCTGCTTTAAGCTGGGCCAGTGTTTTATGCCCTTGGAAGCCCCTTCTGATATAAATTATTCCATGAATATCTGAGCTAGCATTAAGGCATGAAGATATTTATAACTAAAAACTGTTCTGTCCTCCAAATAACATTGCCTTGAGTTTTCTCGAGCATGGACCATTGGAAGGATCAACTTTATCTGATGAATTCCTGTCTAGGAAATATATGATTCTTACCTATTTCTCTGAAGAATTAAGATTCTTCAGTTCCTCAGCTTACATGAACAGATGTAAAGCTTCTCTCAACACTTATGTTTTCTTTCAAGGGTAACACTAGGCATTTTCTTTTTTTGTCACAGCTCGTTAATACATTGGAAAGAAAATAGGATAAGGAAATATCAGATAATGAAGATGCAAGGCTGAAAATAAAACTAAACTGATATATCATTTGGGTAATTTTAAAGTCTTCTACAAAAGTTTTGTTTCACTTCAATGGGATTTTTCCCATTATTGGTGACTAGGTAAATTTGTTTATGATGTCATGTATCCATTTAATAATTTTATATGGCTTTGTGTACTATAATTCCTTAAAGCAGAAAGTTATGGTGAAGTTCCAATAAAATTTAGTCCCAGACTATCTGATAGTGCTAGTTGCATTCCAGGCTACCAGCTTGAATCTGTTTTGTAAACAGTTGCTTCAGGAGGTCCTTCTTCCTTTTTTTCATGTTTCAAGCCTGTCCCCATCAGTGATTCTGTGTGACTGCTCACTTTGTAGATGCAAGATCTTAGACCAAGTCGGGAAGCCAGAAATTCTTGTACAAAAAATAACACCAACTCATTCACTCTGGCCTGCAGCTAGTCTCTTAAGCTAAATAGTAGTTTGTTTTTTATTTAATCTTCTAATTTGTTTGTTCGTTTGTTTTTCCTCTGAGTCTCTATAAGCCTGGTAAATATTTGTATAGTTTTTGTCTTAGACTGGTGAATAATTTAGCCTGGAGCTGCATGGACTAAATATAAACGAATAAAATGTTCTACTCTTGTATCTATAGTTGCAGAATTGTCAGTTGTCTTCCTTAAATGCCTTTTCCTGACTCTGCAGCAGACTTTAAACTAGATGGCCTCAAGTACTGTGTTGATAGTTTCAGTAATGCGTTGTGATGATTTATGCTCCTGCAGAGCTCAGGTTTTAGGACTACCTCCTTTTCCTCAAAATACCTCTAAAGAGGAAAATTAGATTTAGTTGATTAAATGTTGGATATTTTTTGTTTATATAGAAAAAACTTCAG
Seq C2 exon
AGTCAGAAGGTTGTGTGGATCAGAAGGCCATGGATGGGGAAAGAAATGAAAGCCGAACAAAGAAATCTGAAGAACCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]