BtaINT0011076 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49648295-49649002:+
Coord C1 exon
chr3:49648295-49648419
Coord A exon
chr3:49648420-49648903
Coord C2 exon
chr3:49648904-49649002
Length
484 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TATGCCCTCTCACTGTCTAGCAT
3' ss Score
8.35
Exon sequences
Seq C1 exon
ATTGTGCTCCCGGCCACTTTTGTGTTTTTGGCTCTAATGCTTTCCCTCATCATCCCTCCTTTTGGTGAATATCCTGCTTTGACCCTTCACCCCTGGATGTATGGACAGCAGTACACCTTCTTCAG
Seq A exon
GTGTGTAGACTCGTCCCCAAAGGTCATCATTCACCTCCTTGGGTTGTGGGGCCCTTGGGTCCCCTGCTAACTGGTAGGGCCCTGACCTTCCTACTCTCTGGGACAGTCCCAGTGTGATAGGGGTCCTCAGGCTGCCCTCGGAAAGAAAGATAACTTACCTGCCACTTGGGAAAGGTGACCTCCACGTGGACACCCAAAACTGCCAGGAGTAAAGGAAAGAGAAGGCAGATGGTGGGTGAGTGGGTTTAAGTTCCCTTGTTTTGAATTGCAGACATGATGTGGCATCAGACTACTGAGTGTGTTCAGGCAGCCTACCTACCCCCTTCTCAGGAGACCCATAGCCACATCAAGGCAGCGTCCTATGCCCTGTGTACAGGCCTGGCACACAGTACCCATTCAGTAGACATCTGTTGAGTTGCATGTTGGTGGCTTTGTTCCTCTGTCCCAGTCACATGTCCACTGTCTATGCCCTCTCACTGTCTAG
Seq C2 exon
CATGGACCAGCTGGACAGTGAATGGCTCTCAGCACTTGCAGATGTCCTTGTGAATAAGCCAGGCTTTGGCAACCGCTGCCTGAAGGAAGAGTGGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010:ENSBTAT00000023982:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGCTCCCGGCCACTTT
R:
GAAGCCACTCTTCCTTCAGGC
Band lengths:
223-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]