GgaINT0034979 @ galGal3
Intron Retention
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14404777-14405606:+
Coord C1 exon
chr8:14404777-14404901
Coord A exon
chr8:14404902-14405507
Coord C2 exon
chr8:14405508-14405606
Length
606 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
GTCTCATCTTATTCCCTTAGCAA
3' ss Score
6.28
Exon sequences
Seq C1 exon
ATTGTTCTGCCTGCTAGTTTTGTGTTGCTGTCTTTAGTGCTTACAGTCATTATTCCTCCATTTGGAGAATATCCTGCCTTAACTTTAGACCCTTGGATCTATGGACAACAGTTTACTTTCTTCAG
Seq A exon
GTATGAATAATCAATGAATTGATTTTTGACATCTGTCATATACACGCACTAGCATTTAGGATCGTGAGGCTCTGTCTTACTGGGCTATCATTCTATGTAGTATAAGAAAGGAGTAATTTCACAGCAAATCCCAAGTAGCATGAAACTGGTGCAAGTGGGGAACACAGCTGCTAGTATATCTAACCAGCAATCCTCAATTATAATACTGTATTTGGTACTCCTACCTGAGTTCATGACCTCAGCACTTAAGAAGTTAGGTATCCTAACAGGACATTCAGTACAGTAAGAAATTCGACTGTTTCTGATATGCTATTGAACTACTCCTTTATTCATTATCTTATATTACACAGAACAAGATTCAAACCTATCTTTTGACCTGTGGTAGGTTTATTTATAATTAGTACATATTTGACCACAGTTTTGAAAACAAGATGAAAACAGAGAATCTTAGGTTTTGTAATGCTGTTGCTTAGCTGTTTCAGCCCATGCTCCATCCTTTGGCTAGTTGATTCTGAAATATTGCTGTCTTTCACCAGTTGCTTATGTATATTCTAGTTCAACAATTTGAATTTTTTCAATGGAGAAAGTCTCATCTTATTCCCTTAG
Seq C2 exon
CAATGAGCGTCCTGGCAGTGAGCAGATGGTCTCCCTCACTAATGCTTTCTTAAATAAACCTGGATTTGGAAATCGCTGCTTGAAGAATCAGCCACTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGCCTGCTAGTTTTGTGT
R:
AGAAGTGGCTGATTCTTCAAGCA
Band lengths:
222-828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]