RnoINT0010245 @ rn6
Intron Retention
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225740619-225741329:+
Coord C1 exon
chr2:225740619-225740743
Coord A exon
chr2:225740744-225741230
Coord C2 exon
chr2:225741231-225741329
Length
487 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CTCTCTCTCTCTCTCTCTAGCAT
3' ss Score
12.79
Exon sequences
Seq C1 exon
ATTGTTCTCCCTGCCACTTTTGTGTTCTTGGCTCTGATGCTTTCCATCATCGTGCCTCCGTTTGGTGAATTCCCAGCTTTGACCCTTCACCCCTGGATGTATGGGCATCAATTTACCTTCTTCAG
Seq A exon
GTGCGTGGTTCATCCCAGGAATCACCATTGTCCCCAGACATGTGATATTCCTGGACTGTATACCTGCTAGAAGGGTCCTGACCTCCCTACTTCCCTGGAATCTTCTCCAAGGCAGAAAGAGTCTTGGTGGTGTACTTAAAAGAGAAGCTAAATTTGGAAGCCACTGCTTAGCAGTGTGGTACCCAGTGGAAGACAGTGTGGTACACAGTGGAAGGAAAGCAGGTAAGGAAAAGAGATATGAAGCCCAGGAAAGGGGGTTGAAGCTCCATTTTTGTGAGGAATAGATGATCTGCCGTCTGACTTCTAGGTGTGTGTGGTAGGATACCTCACTTCCAGGAGATCCACAACCTTTCTAAGTCAGGATTCAGTGCCTTGCCAGCATGCCCGGCATCAAATACACATTCAGTAAATGTTTACGTGTTAGTGTACTTGTCCAGCCTATTCCAGTCTGACTAGCAGGTGAGCCGCTCTCTCTCTCTCTCTCTAG
Seq C2 exon
CATGGATGAACCCAACAATGAACACCTTGAAGTACTGGCAGATGTCCTTTTGAACAGGCCAGGTTTTGGCAACCGTTGTCTAAAGGAAGAGTGGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892:ENSRNOT00000017878:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTCTCCCTGCCACTTTTGT
R:
AAGCCACTCTTCCTTTAGACAACG
Band lengths:
222-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]