BtaINT0011087 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49666178-49669206:+
Coord C1 exon
chr3:49666178-49666325
Coord A exon
chr3:49666326-49669082
Coord C2 exon
chr3:49669083-49669206
Length
2757 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
CCTGCTTTTCTAAATTTCAGACG
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTGGGCAGTCATTCCCATGATGTATCCGGCATCCTTCCTGTTCGATATCCCCAGCACTGCCTATGTGGCCTTATCTTGTGCTAATCTGTTCATTGGCATCAACAGCAGTGCCATCACTTTCGTCCTGGAATTATTTGAGAATAACCGG
Seq A exon
GTAAGCGTGCCTTTCTTGGCTGCTTCTTTTGATTATTTGGACACTAGAGAGTGTGTGATGGTCAAGCAGAGCCAGGGGCAAACTCCGTGTCTGTGCATTCTTAGTGTGTAAATGAATGTTGCTTCCTCCCTTCCTTTATCCCTCCCCTCTTCCCTTCCTTTCTTTGTTTCTTTAAGCTCCTTGTTCATTCATATGCTCTGAATGTCATGGTTTTCTGGACCCTTTCTGCAATTTATAAAGGACCTTTCATAATTCTAAGCTTTTAGATCTTACTTCTTCAAGAAAGTATCCTTGGGGACTTTGGGTCTTAGATTTTACATACACAAGGTAACTCATTCATGTAATTTCAGAGTTTAAAAAGAACAGAAAGGCATACATAAGTCTCCTCCTTACTCCTGTTTCCCACTTGCCTAGTTCCATTCTCCAGAGGCAACGTTTTGTTTGAATTTCCTATGTATTCTGGAGTACGTGCATGGGTGTTCAGTATGCTGACATATAAACGAATACATATATGATCTTTCTCCCAATTTCATACACATATTGTAACAGAAAAATATGAAAATTAATCCTGAGATTAGGCTTAGGAATCTGTAGTGCTGAACGACCCACTTTATGAGCTGTGCGGTGCAGTTGTCACATGCACACCCGCAGACTGCTCCTTGCCCAGCAAGAACTGGCAGAAGGAGTACTAACACAGTGGCAGTGCCCAGGGCTGTCTTTGCTCTGCGCTTGCTCCCCCGGTCCTCTGTGTCTCAGCCCTGGCCGTCCTGGAAACACTCCCGAGGATCAGTGGGCTCTCCCGTGTGCCTGTGTCCCCAGCACCTCTCTTGCCCTTCTCTCTCAGAAGGTCTTCGCAGTTGAGAGGGTGGGCACCAGCCAGCACATCTGCACACCTGTCCTGTGGCCCCTCCCCCACGCCTGCTTCCAGGCCTTGCTGGGAGGACCCAAGGCAAACCTGCATTAACCATCCAGTCCCATGGCTTCCGGAGAGCAACTCTTTCCCTGACTTCATCAGGCTTTCTGTAGCCACTAAGCAAGAAGCAAAACCCCAGCTGTCCCATGACTGATAAAAAATGTACCACATCACAGTCAGACCCCAGAAAGGAGGTGGATGAGAACACAGACTCCACTAATGACCAGAGCATCCTGGAAGACTGAATATGCTGCTCTTTGGAGTTGCTTTTGTCACAGGCTCACAGCTCACCACATCTTGATAGAGTGTGTTACTTCAAAATAAAGAGCTTAAACCAACTCAAAACATCCCACTCCTGCAGACTGCACTCATTTAGCCAACAATTACTGAGTGCGTACCCCTCCCCTGCATAAAAAAGCTGGCTGCTTCCCCCTAAATTGTGGAATAGACGGATGCTGCAGAAATTCCCAGAATCCCACAGGAGGCTCCTCAGGTCACAGAGACATCCACTAGGAGAGCACTGTGTGATGAATGTGCCAGTATAAACCAGTGTGGCCCCAGGAACTCCCTTCCGGTGAGGAAATGATCTGCATGCTGAATTAGGAACCGATATAAGCGGAGGTTCATAACCTTCCATGAGACAGTGTGTGACAGAACATTGAAGGAGCAAGACTGATAAAACACCACAGACCAGAGTAGGCCAAAAGAGCTGGACTGTGGGGTCAGCAGGGCCTCGATAGAGGAATTCAATTCATACCTGGCTTGGAATAAGTAGTATTTTATTAACCCACTTAATAAACAGTGAAGTACCTACAATGAGCTAATCAGGTGTCAGGTGCTTAGGAAGGACACCAAAATAATTTGGACCCAGTCCCTGCTCTCTGGGCAGCAGTGACTAGTGCAGAAAATATGCAGGTAGGAAAAAAAATTAATCGTGGTGATGTGGTAAGTCCTCTAAGAGAGGGTTCGATGTTTTTCCATGGGAACCGGGAAAGGTTTAGGCGAGAGGAGAGTATTTGAGCTAGGTTTCTAAAGAAGGCCAGGAATCTACCAGAGAACAGGAGGGGAAAGAGCATTCTTTTCACTAATAGCAATGGTTAATAGAAGTTACAAGTGCAAGGGCCTAGAGATAAGAACGTAGTGCCTTCCAGGAAGAGTGTGGGGGGACGGTGGGGAGGGTAGATAGACGGCGATGAGGTGATGTAAGCAAAAGTGCAGAGGCCAGAGAGGAAGGAGGTTGTACGGCAGAGATGGGCCAGAAAAGCAGGTCCGCCTCAGCCCCTTGTGTCCCTCTGCCTGACACTGACACTTGAGGCTCATACAGCAAATACAATCTACCACCTGAAAAATAAGTCCCCCAGCACAACCCAGGCACCAGGTAGGATCTCCGGCCATCTTTTCTGCTGGTGACAGTTGCAGACAGCCATTGCTGTCCTTTGGGAGCTGAGAGGCAGAGCTAGAAGATGCTCAGGGGCCCTCTCCGCTTTGGTACAAGCTAGGCTACGACACTGCCAGCGACAGAGCCTGAGCCCCAACGCAGCCCGCAGCTGTACCAAAGGAGGGAGAGTTAAGGCCACAGGCCCAGCAGCTGCTGCATCTCCTGGTAACAAAAGCCTGGGAGGCTTCCTGTGTAATTTCAAAGTGAGTCTGCAGTGAAAGCTCCCCAAGCAGGCTGCTGGCTAGGGACACCTCCTGTGAGTATTCCCAAGCCTCCTATCTGCTTGACAGATCCCTCCAGCAGCCAGGCCCCTCTGGCTGCACACCATCCCCTGGCCCTACTCCACTCAGGAGGGGGCGGACAGGCTTGGCCCCATCACTGACTGTCCTGCTTTTCTAAATTTCAG
Seq C2 exon
ACGCTGCTCAGGATCAATGCCATGCTGAGGAAGCTGCTCATTATCTTCCCCCACTTCTGCCTGGGCCGGGGTCTCATTGACCTGGCACTGAGCCAGGCAGTGACAGACGTCTATGCCCGGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010:ENSBTAT00000023982:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]