BtaINT0011182 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45170756-45171259:+
Coord C1 exon
chr7:45170756-45170866
Coord A exon
chr7:45170867-45171087
Coord C2 exon
chr7:45171088-45171259
Length
221 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
AGTCTGCCCTCCTTCCTCAGTGC
3' ss Score
8.55
Exon sequences
Seq C1 exon
GCGAGTATGGGATCCCCGAACCGTGGAACTTTCCCTTTCGGAGGAGCTACTGGTTTGGGTCTCAGACCCCCAAGGGTCCTGCCCCAGTTCTGACCGCACAGGACCCCAAGG
Seq A exon
GTAAGGCCCAACAAACCTTGGCTGTCACTTCCCTGTCTGGATTCTCAGCCCCTACAAAACCCAGGTCCTCATGGATCCCAATTCTCTGGACTTTCCCAGGTCCTGAGGCTCCCCTAACTCCCACAGACCCCAGCCCCACAAGTCCCTGACTCCACAGACCAGCTTGAACAGTCCCCAGGCTTCTGAGGGCGCCCATAACTGAGTCTGCCCTCCTTCCTCAG
Seq C2 exon
TGCTGGTGGAGGAGGCGCCCCCTGGCCTGATTCCGGGGGTCTCCATACGCGGCCTGGAAAAGCGCTTTGCTGGCAACCCGCAGCCGGCGCTGTGCGGACTCAGCCTGGACTTCTACCAGGGCCACATTACCGCCTTCCTGGGTCACAATGGGGCTGGCAAAACGACCACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(18.6=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCCGAACCGTGGAACTTT
R:
ATTGTGGTCGTTTTGCCAGCC
Band lengths:
272-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]