RnoINT0010358 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12753520-12754979:-
Coord C1 exon
chr7:12754869-12754979
Coord A exon
chr7:12753692-12754868
Coord C2 exon
chr7:12753520-12753691
Length
1177 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACGCTGCCCTCCCTCCACAGTTC
3' ss Score
11.32
Exon sequences
Seq C1 exon
GCCAGTATGGAATCCCTGAACCATGGAATTTCCCCTTTCGGAGGAGCTACTGGTGTGGCCCTGGACCTCCCAAGAGTTCTGTCTTGGCCCCTGCCCCACAAGATCCCAAGG
Seq A exon
GTGAGTTCCCATGACTCTCAGTAATCCTTGATGAGAAACAGGTCCAGCAAGGCAACTCAATCCCCTGGGCACTCCAGATCCCCAAGCTCCGGGCCGCATCCCCTCAGGATCTCTCCCAAAGGCTTCCGAATGCTAGGCAAGCATTCCACCACCACGGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTCTATCCGCTTTCTCCGCCTCTATCCGCCTTCTCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTCTATACGCTTTCTCCGCCTCTATCCGCCTTCTCCGCCTCTATCCGCTTTCTCCGCCTCTATCCGCCTTCTCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTCTATCCGCCTCTATCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTCTATACGCTTTCTCCGCCTCTATCCGCCTTCTCCGCCTCTATCCGCTTTCTCCGCCTCTATCCGCCTTCTCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTCTATCCGCTTTCTCCGCCTCTATCCGCCTTCTCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTCTATCCGCCTCTATCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTTCTCCGCCTCTATCCGCCTTCTCCGCCTTCTCCGCCTCTATCCGCCTTCTCCACCTTCTCCGCAACTATCCGCCTTCTCCGCTTTCTCCGCCTTCTCCATCTTCTCTACCTTCTCCGCCTCTATCCGCCTCCTCTGCTTTCTCCGCCTCCTCCACCTTCTCCGCCTCCTCTGCCCTCTCCGCACCCACCCATCTGCCTCTCCCGATGGGTCCTAGGCAGGAGCTCTCTCCCTAAGCCACGCCCCCGGTTCCCCCCCTGGAGGGATTGTAGACTGAGGCTCTACCACTGAGCCGCACCCCAACCCTATACCTTTTATTTGGAGACCGGGTCTTGCGAAAGTTGCCCAGGTTGAACCTCCCTCGGTCTGCAGAGTAGCTGAGCTGACAGTTCTAACCATCGTGGGCATCTCCCTTAACTCTTAGAGGATCTTAATTCTGACCGACACGGGTCCACAGCCAACGCTGCCCTCCCTCCACAG
Seq C2 exon
TTCTGGTGGAAGAGCCACCACCTGGTCTGGTTCCTGGTGTCTCCATTCGAGGCCTGAAGAAGCATTTTCGTGGCTCTCCACAGCCAGCCCTGCGAGGGCTCAACCTTGACTTCTATGAAGGCCACATCACTGCCTTTTTGGGTCACAACGGGGCTGGCAAGACAACCACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(18.6=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTATGGAATCCCTGAACC
R:
AGTGTGGTTGTCTTGCCAGC
Band lengths:
283-1460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]