GgaINT0144853 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2385033-2385416:-
Coord C1 exon
chr28:2385263-2385416
Coord A exon
chr28:2385205-2385262
Coord C2 exon
chr28:2385033-2385204
Length
58 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GACCCACCGGTGGCTCCCAGTGC
3' ss Score
3.56
Exon sequences
Seq C1 exon
GGCCAGTACGGGATCCCCAAGCCCTGGAATTTCCCCTTCCTGAAGAGCTACTGGTTTGGAGAGCCACCCTCAGCCGGATACCCTCCGTACCCCAGCGGTCCTCATGCTGCACCCCAAGGTGAGCCCCTGTCCACCACGATGGGAGGGCCAGGGG
Seq A exon
GTGAGTCCTGCCCCATTGTGAAGGTCCTGCCTGGCTGTGACCCACCGGTGGCTCCCAG
Seq C2 exon
TGCTGGTGGAGGAGCCGCCCGCCCAGCTGCAGCCCGGAGTTTCCATCCGCAACCTGGTGAAGGTTTACCGCAGCAGCAGCCATGTGGCCATCGATGGGCTGAGCCTGGACTTCTACGAGGGGCAGATCACCTCCTTCCTGGGCCACAACGGGGCCGGCAAGACCACCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(23.1=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACCCTCCGTACCCCAG
R:
CAGGTTGCGGATGGAAACTCC
Band lengths:
135-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]