GgaINT0144853 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2830533-2830915:-
Coord C1 exon
chr28:2830799-2830915
Coord A exon
chr28:2830705-2830798
Coord C2 exon
chr28:2830533-2830704
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GACCCACCGGTGGCTCCCAGTGC
3' ss Score
3.56
Exon sequences
Seq C1 exon
GCCAGTACGGGATCCCCAAGCCCTGGAATTTCCCCTTCCTGAAGAGCTACTGGTTTGGAGAGCCACCCTCAGCCGGATACCCTCCGTACCCCAGCGGTCCTCATGCTGCACCCCAAG
Seq A exon
GTGAGCCCCTGTCCACCACGATGGGAGGGCCAGGGGGTGAGTCCTGCCCCATTGTGAAGGTCCTGCCTGGCTGTGACCCACCGGTGGCTCCCAG
Seq C2 exon
TGCTGGTGGAGGAGCCGCCCGCCCAGCTGCAGCCCGGAGTTTCCATCCGCAACCTGGTGAAGGTTTACCGCAGCAGCAGCCATGTGGCCATCGATGGGCTGAGCCTGGACTTCTACGAGGGGCAGATCACCTCCTTCCTGGGCCACAACGGGGCCGGCAAGACCACCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(18.6=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACCCTCCGTACCCCAG
R:
ATCTGCCCCTCGTAGAAGTCC
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]