BtaINT0011196 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45174962-45175502:+
Coord C1 exon
chr7:45174962-45175249
Coord A exon
chr7:45175250-45175469
Coord C2 exon
chr7:45175470-45175502
Length
220 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TGTGTCTGTCTCTCTCACAGCCT
3' ss Score
11.26
Exon sequences
Seq C1 exon
GGCACCAGCATGCACACGGCCTGCCCTCTGCCACTTCTCGGTGCCTGATGTCCCTGCGGACATGGCTGAGGTCTTGGCCAGTGGCAACTGGACCCCGGAGTCTCCATCCCCCGCCTGCCAGTGCAGCCAGCCTGGTGCCCGCCGCCTGCTGCCTGACTGCCCTGCTGCGGCCGGTGGTCCCCCGCCACCCCAGGCGCCAACCAGCTCTGGTGAAGTGGTCCAGAACTTAACGGGCCGAAACCTGTCTGACTTCCTGGTCAAGACCTACCCGCGCCTGGTGCGCCAAGG
Seq A exon
GTGAGCACCACCCTGGACTTGGCGTGGCCAGCTGTAGCAGGGGTCCAGTGGGGAGGATGTGGTACAGTCCTGGGAGGGGTTGGGGGGATGCCCAGGCTGGGGCTCTGGCCTGGGGCCTACTGGGGGCCCTCTGTGCCTCCTTCTTTTAATTTGTCTCACTCAACTCACCAGCATCTTTGTCTCTGTCCCACTCACCTCTCTGTGTCTGTCTCTCTCACAG
Seq C2 exon
CCTGAAGACCAAGAAATGGGTGAATGAGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCTCTGCCACTTCTC
R:
TCACCCATTTCTTGGTCTTCAGG
Band lengths:
292-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]