RnoINT0010373 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12749087-12749520:-
Coord C1 exon
chr7:12749233-12749520
Coord A exon
chr7:12749120-12749232
Coord C2 exon
chr7:12749087-12749119
Length
113 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
CCTGTGTGTCTCTCCCGCAGCCT
3' ss Score
11.99
Exon sequences
Seq C1 exon
GGGATCTGAGTGTACACATTCCCTGGCTTGCTACTTCACGGTCCCAGAGGTCCCTCCAGATGTGGCCAGCATTCTGGCTAGCGGCAACTGGACTCCAGACTCTCCATCTCCAGCCTGCCAGTGCAGCCAGCCTGGAGCCCGCCGCTTGCTGCCAGATTGCCCTGCTGGAGCTGGGGGTCCACCACCACCCCAGGCTATGGCTGGCTTTGGGGAGGTGGTCCAGAATCTCACTGGCCGAAATGTGTCTGACTTTCTGGTGAAGACATACCCCAGCCTGGTGCGCCGGGG
Seq A exon
GTGAGCACCCAGGCTCTCTGTGCCCAGCATCGGGGAGGCTGGGCAGGTTCCCATGCCCTCTTACCCCTCACATTTGACTGTATTACTCTGTACCCTGTGTGTCTCTCCCGCAG
Seq C2 exon
CCTGAAGACCAAGAAGTGGGTGGATGAGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTGGCTAGCGGCAACTG
R:
TGACCTCATCCACCCACTTCT
Band lengths:
251-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]