GgaINT0144863 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2827045-2827343:-
Coord C1 exon
chr28:2827249-2827343
Coord A exon
chr28:2827078-2827248
Coord C2 exon
chr28:2827045-2827077
Length
171 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTCTGCCCTGTTTCTTCCAGGCT
3' ss Score
10.31
Exon sequences
Seq C1 exon
GTGCAAAGGGGCACAGGGGACATCCTGCTGAACCTGACAGGAAGGAACATCTCTGACTACCTGGTGAAAACCTACCCGCAGCTCATTCGCCAGGG
Seq A exon
GTGAGTGCTGCCAGCACCTGTCCTGTGCGTGGGGACACCACCGGGACGCTATGGGGAGGGCGGTGGGGAAGGTGGGACAGGGCAGAACGCGATCCAGCTCATGGCTGAGCTGTCACACACAGCTGTGATGTCTCCTCACTGCTGTTTCCCCCTCTGCCCTGTTTCTTCCAG
Seq C2 exon
GCTCAAAAGCAAGAAGTGGGTGAACGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGGCACAGGGGACATC
R:
CTCTGCTCGTTCACCCACTTC
Band lengths:
124-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]