GgaINT0144863 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2380796-2381522:-
Coord C1 exon
chr28:2381148-2381522
Coord A exon
chr28:2380860-2381147
Coord C2 exon
chr28:2380796-2380859
Length
288 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
AGCACCCAGCTCTCTTGCACATC
3' ss Score
-3.52
Exon sequences
Seq C1 exon
GTGCCCGCTGAGCAGGACGGGGCCGTGCCCACCCGCGTCCCACCCCGACGGCTTCAGGCAGCCCCCGGCCTCACCGGCCCTGCTGGAAGTTCTGCGGCGTGGGAACTGGACGCGAGCTGAGCCGTCCCCCCCCTGCCAGTGCAGCGGGCCGGGGGCGCGCAGGATGCTGCCCGAATGCCCCACGGCCGCCGGAGGGCTCCCACCGCCCCAGGTACCCGCGGCTGCCGGTGGAGTCCAGGCAGGTGGTGGGGCTGTGCGTCCATCTGTCCATCCCCACCAGGTGCAAAGGGGCACAGGGGACATCCTGCTGAACCTGACAGGAAGGAACATCTCTGACTACCTGGTGAAAACCTACCCGCAGCTCATTCGCCAGGG
Seq A exon
GTGAGTGCTGCCAGCACCTGTCCTGTGCGTGGGGACACCACCGGGACGCTATGGGGAGGGCGGTGGGGAAGGTGGGACAGGGCAGAACGCGATCCAGCTCATGGCTGAGCTGTCACACACAGCTGTGATGTCTCCTCACTGCTGTTTCCCCCTCTGCCCTGTTTCTTCCAGGCTCAAAAGCAAGAAGTGGGTGAACGAGCAGAGGTGGGTGCGGGGGCAGTGGGTCAGCTCGGGCAGGGTGGCCATGCAGTGCCATGAGAGGGTTGGAAGCACCCAGCTCTCTTGCAC
Seq C2 exon
ATCCAGGTACGGTGGCTTCTCCCTGGGCGCTGGTGGCTCTCAGCTCCTGCCATCAGCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(4.9=12.7)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGGACGCGAGCTGAG
R:
GAGAAGCCACCGTACCTGGAT
Band lengths:
294-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]