HsaINT0000805 @ hg38
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1055097-1055939:+
Coord C1 exon
chr19:1055097-1055351
Coord A exon
chr19:1055352-1055906
Coord C2 exon
chr19:1055907-1055939
Length
555 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
TCTGTCCATCTCTCCCACAGCCT
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTTCTCGGCACCAGAAGTTCCTGCTGAAGTGGCCAAGGTCTTGGCCAGTGGCAACTGGACCCCAGAGTCTCCATCCCCAGCCTGCCAGTGTAGCCGGCCCGGTGCCCGGCGCCTGCTGCCCGACTGCCCGGCTGCAGCTGGTGGTCCCCCTCCGCCCCAGGCAGTGACCGGCTCTGGGGAAGTGGTTCAGAACCTGACAGGCCGGAACCTGTCTGACTTCCTGGTCAAGACCTACCCGCGCCTGGTGCGCCAGGG
Seq A exon
GTGAGCCATGCCCTGGGACTCAGTTTCCCTGGCTATAGCATGGGTCCTTGGGTTGCTGGGGCTGGTGTGGTCCTGGAGGAGGAAGTGGAGGGGTTGGATGCCCAGCTTGGGGCTACGGGCTGGGAGTCTCGCGTACCTTCCTTTCCTCTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGAGGTGTGATCTCAGCTCATTGCAACCTCCACCTCCCAGTTTCAAGCGATTCTCCTCCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCACCACCACTCCCGACTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCAGGAGCCACCGCGCCCGGCTTTCTTTCCTGTTTTTGTCCACCCTTGACTCTGTGCTCCCCTCTCACCATCTCTCTCTCTGTCCCACATCCCTGTCTGCCTGTGTCTCTGTCCATCTCTCCCACAG
Seq C2 exon
CCTGAAGACTAAGAAGTGGGTGAATGAGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687:ENST00000433129:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.430 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCGGCACCAGAAGTTCC
R:
CTGACCTCATTCACCCACTTCT
Band lengths:
288-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development