BtaINT0011197 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45166129-45166466:+
Coord C1 exon
chr7:45166129-45166270
Coord A exon
chr7:45166271-45166347
Coord C2 exon
chr7:45166348-45166466
Length
77 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAAC
5' ss Score
-4.45
3' ss Seq
AGCCTTCTCTCTGTATCCAGGGT
3' ss Score
8.56
Exon sequences
Seq C1 exon
GTCATTTTCCCAACAAGCCGCTGCCCTCAGCAGGCACCATCCCTTGGCTCCAGGGCCTCATCTGCAATGTGAACAACACCTGCTTCCCGTGGCAAACCCCTGGCGAGGAGCCTGGCGTCCTCAGCAACTTCAAGGACTCCCT
Seq A exon
GTAAACCACTGGGAGCGGCGGGACAGGGGTGGGCAGCTTCGCCTAGCCTCCGCCTCCAGCCTTCTCTCTGTATCCAG
Seq C2 exon
GGTTTCGCGGCTCCTGGCAGATGCTCGCACTGTTTTGGGGGGCCCCAGTGCCCATAGGATGCTAGCTAGCCTGAGAAAGCTGATGCCCATTCTGAAGGCTGCACACACAGCCCGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTTCCCAACAAGCCGCTG
R:
CAAAACAGTGCGAGCATCTGC
Band lengths:
177-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]