GgaINT1005131 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2833562-2834035:-
Coord C1 exon
chr28:2833894-2834035
Coord A exon
chr28:2833824-2833893
Coord C2 exon
chr28:2833562-2833823
Length
70 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGC
5' ss Score
5.03
3' ss Seq
ACATCCCCCCATGCCCGCAGCCT
3' ss Score
7.68
Exon sequences
Seq C1 exon
GCCATTTCCCCAACAAGGCGTTGCCGTCGGCCGGGACGCTGCCTTGGCTGCAGGGCATCCTCTGCAATGTGCGCAACCCCTGCTTCCAGCAGCCCACCCCCGGAGAGACCCCCGGCACAGTGGGCAACTTCGGAGGCTCCAT
Seq A exon
GTGAGCGGGGGTGGCCAATGGGGGATGCCAGGCCGGGCTCCGCTCCCCTCACATCCCCCCATGCCCGCAG
Seq C2 exon
CCTGTCCCGCCTGCTGGCCGATGTCCGCCAGGCCCTGCACCGTGCTGATGGATGGCAGCTCCTGCACCACCTCGCCCACCTCCTGCCTGCACTGCGGGGCCGCACCGCGTCGATCTCATCCCGGCTGCTGCGGGACGATACCTTCACACGCCTCCTCCGCACCAACGCCTCGCTGCTGCCCGTGCTGCACCAGGCACTGCTGGAGGGGCTCAGCCCGCGTGATGTGAGTGTCCATGGTGCAGCCGACCTCCCACCACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTGGGCAACTTCGGAG
R:
GAGGCGTGTGAAGGTATCGTC
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]