HsaINT0000815 @ hg38
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1041831-1042176:+
Coord C1 exon
chr19:1041831-1041972
Coord A exon
chr19:1041973-1042063
Coord C2 exon
chr19:1042064-1042176
Length
91 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGC
5' ss Score
3.28
3' ss Seq
TGCCCTCTCTCTGTCCCCAGGGT
3' ss Score
14.19
Exon sequences
Seq C1 exon
GCCACTTCCCAAACAAGCCACTGCCATCGGCGGGCACCGTGCCCTGGCTCCAGGGTCTCATCTGTAATGTGAACAACACCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAACGACTCCCT
Seq A exon
GTGAGCCAGAGGCAGTGGGTGCGGCCGGCCTGCAAACTCGGGGCTGCAGTGCCGGCCGGAACCCCGCCTCCTGCCCTCTCTCTGTCCCCAG
Seq C2 exon
GGTCTCCCGGCTGCTAGCCGATGCCCGCACTGTGCTGGGAGGGGCCAGTGCCCACAGGACGCTGGCTGGCCTAGGGAAGCTGATCGCCACGCTGAGGGCTGCACGCAGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687:ENST00000433129:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCAGGGTCTCATCTGTA
R:
CGATCAGCTTCCCTAGGCCAG
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development