Special

BtaINT0011217 @ bosTau6

Intron Retention

Gene
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45167245-45167688:+
Coord C1 exon
chr7:45167245-45167455
Coord A exon
chr7:45167456-45167548
Coord C2 exon
chr7:45167549-45167688
Length
93 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TGCTCCCACCCTGGCCCTAGGCC
3' ss Score
8.8
Exon sequences
Seq C1 exon
CTCCTGGAGCTGCCCAGCCTGGGAGAGCTGTGGGCCCTGCTACAGAGACCCCACAGGCCAGGTGGTCCCCTGGAGGCGGTGGCAGAAGCCCTCTGCAGTGCCAGGGGGCCCAGCAAACCAGGCGGGCCCTCCCTCAACTGGTATGAGGCCAGTGACCTGAAGGAGCTTGTGGGGCAGGAGCCAGCGCAGGCCCTGCGGGACAACAGCCTGA
Seq A exon
GTGAGTGACCAACCTGGTTTCTACCCCTCTCCCTGGGGAAGCAGGGCCAGGACGTGGGCACAGGGCCTCATGGTGCTCCCACCCTGGCCCTAG
Seq C2 exon
GCCCCACCTGCGCTGAGCTGACGGGGGGCCTGGACACCCACCCCCTGTCCCGCCTACTTTGGAGGCGCCTGAAGCCGCTGGTCCTGGGGAAAGTACTGTTCACGCCTGACACACCCTTCACCCGGCAGATCATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.296 A=NA C2=0.085
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATGAGGCCAGTGACCTGA
R:
GGCGTGAACAGTACTTTCCCC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]