RnoINT0010394 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12759086-12759524:-
Coord C1 exon
chr7:12759314-12759524
Coord A exon
chr7:12759226-12759313
Coord C2 exon
chr7:12759086-12759225
Length
88 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCCTCCTCCCCTCGTGCCAGGCC
3' ss Score
8.84
Exon sequences
Seq C1 exon
CTCCTGACGCTACCCAGCCTTGTGGAACTCCGGGCTTTGCTGCGGAGGCCCCGAGGGTCAGCTGGCTCTCTGGAGCTGATTTCGGAGGCCCTCTGCAGTACCAAGGGGCCCAGCAGTCCAGGGGGTCTGTCCCTCAACTGGTACGAAGCCAACCAGATCAACGAATTCATGGGGCCTGAGCTGGCGCCCACCCTGCCTGACAGCAGTCTCA
Seq A exon
GTAAGTCCTTAGGGCTGTGTTGGGTTCCCCATGGGGCCGGTGGAAATAGACATATGTGTGTTATATGATCCTCCTCCCCTCGTGCCAG
Seq C2 exon
GCCCCGCCTGCTCTGAGTTCGTGGGGGCACTGGATGACCACCCTGTGTCTCGGCTGCTCTGGAGACGCCTGAAGCCATTGATCCTCGGGAAAATTCTCTTTGCACCTGACACAAACTTCACTAGGAAACTCATGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGGTACGAAGCCAACCA
R:
TCCCGAGGATCAATGGCTTCA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]