GgaINT1005133 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2832879-2833488:-
Coord C1 exon
chr28:2833104-2833488
Coord A exon
chr28:2833019-2833103
Coord C2 exon
chr28:2832879-2833018
Length
85 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGA
5' ss Score
1.92
3' ss Seq
TCGGCTCTCCCCCCTGCCAGGTC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GAGTGGATGAGCTCAGAGATAGATGATGCCGTGGCAGCCCTGGGTCCCTTCCTGCAGAGCGCTGAGTCCCTGCTGCAGGAGGTACCGCATCCCCACATCATCCCCACATCCCTGCCCCATCCTGGGCCCTCCCCGCAGCCCCTCTCTCTGCAGCTCTCCTCCATGGGCACCGTGGCTGAGCTGCAGCGTGAGGTTGCGCTGCTGACGGCTCCCGGTTCCTCTGCTGTGGGCGCCTTTGAGGCCGTATCGCGCATCGCCTGTGGGCACCCCGAGGGTGGGGGGCTGCAGGTGCCCTCCCTCAACTGGTATGAGGACAGCGACGTCAGTGCCTTCATGCACCGCAATGGCTCCAGGCACAGCACGGAAACCCCCGACAACGACAGCA
Seq A exon
GTGAGAGGGGACGGGGGGTCAGGGAGCCTCAGGTGCCCCTCTGGGGGTGGGGGCAATGCAAGGCTTCGGCTCTCCCCCCTGCCAG
Seq C2 exon
GTCCCTTCTGCCAGGAGCTGCTCCGCAGCCTGGAGGCTGCCCCACTCTCACAGCTCTTCTGGCGTGGCATCAAACCCCTGTTCATGGGCAAGATCCTGTACACACCTCCCAGTCCCGCCACCGACCGCGTCATGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.170
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGGACAGCGACGTCAGT
R:
GGATCTTGCCCATGAACAGGG
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]