BtaINT0011216 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45166930-45167455:+
Coord C1 exon
chr7:45166930-45167010
Coord A exon
chr7:45167011-45167244
Coord C2 exon
chr7:45167245-45167455
Length
234 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGGTGACCCCCCTCCTCCAGCTC
3' ss Score
6.91
Exon sequences
Seq C1 exon
GAGTCCCTGGGCTCTGTGCTGGGTCATGCCCAGGAGTCCGTGGGCAGCCTTGTGGAGACTGCAGAGGACATGGCCCAGGAG
Seq A exon
GTAGGAGGCCAATGCAGTCTCCGCCCCTGCCAGGAAACTAGAGGGGTGGGCTGCAGGAAGGGGAGAGGACAGAGCAACCCTGGGCACCTGTCCTCAGTAGTTGTATGGGGGTACTAGGGCAGAAAGAGAGGGCAAGGGTGCTCCTGGTGGAGGGCCCTGCCCTGGTTATAGCTTGGTGGTGGGGTCACACGGAAGGGAAGCCTGCCCAGCCCTCTGGTGACCCCCCTCCTCCAG
Seq C2 exon
CTCCTGGAGCTGCCCAGCCTGGGAGAGCTGTGGGCCCTGCTACAGAGACCCCACAGGCCAGGTGGTCCCCTGGAGGCGGTGGCAGAAGCCCTCTGCAGTGCCAGGGGGCCCAGCAAACCAGGCGGGCCCTCCCTCAACTGGTATGAGGCCAGTGACCTGAAGGAGCTTGTGGGGCAGGAGCCAGCGCAGGCCCTGCGGGACAACAGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.296
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCCTGGGCTCTGTGC
R:
TCAGGCTGTTGTCCCGCAG
Band lengths:
292-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]