BtaEX6040234 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45166930-45167688:+
Coord C1 exon
chr7:45166930-45167010
Coord A exon
chr7:45167245-45167455
Coord C2 exon
chr7:45167549-45167688
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGGTGACCCCCCTCCTCCAGCTC
3' ss Score
6.91
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GAGTCCCTGGGCTCTGTGCTGGGTCATGCCCAGGAGTCCGTGGGCAGCCTTGTGGAGACTGCAGAGGACATGGCCCAGGAG
Seq A exon
CTCCTGGAGCTGCCCAGCCTGGGAGAGCTGTGGGCCCTGCTACAGAGACCCCACAGGCCAGGTGGTCCCCTGGAGGCGGTGGCAGAAGCCCTCTGCAGTGCCAGGGGGCCCAGCAAACCAGGCGGGCCCTCCCTCAACTGGTATGAGGCCAGTGACCTGAAGGAGCTTGTGGGGCAGGAGCCAGCGCAGGCCCTGCGGGACAACAGCCTGA
Seq C2 exon
GCCCCACCTGCGCTGAGCTGACGGGGGGCCTGGACACCCACCCCCTGTCCCGCCTACTTTGGAGGCGCCTGAAGCCGCTGGTCCTGGGGAAAGTACTGTTCACGCCTGACACACCCTTCACCCGGCAGATCATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766-'7-8,'7-7,8-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.296 C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCCTGGGCTCTGTGC
R:
CTGGGCCATGATCTGCCG
Band lengths:
221-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]