RnoEX6030621 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12759086-12760110:-
Coord C1 exon
chr7:12760030-12760110
Coord A exon
chr7:12759314-12759524
Coord C2 exon
chr7:12759086-12759225
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTGGGTGGTTTTTTTGGCAGCTC
3' ss Score
6.15
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GCATCCCTGGAGACCGTGCTGGGTCAAGCCCAGGATTCCATGAGAAAGTTCTCAGATGCTACCAGAACTGTTGCCCAGGAG
Seq A exon
CTCCTGACGCTACCCAGCCTTGTGGAACTCCGGGCTTTGCTGCGGAGGCCCCGAGGGTCAGCTGGCTCTCTGGAGCTGATTTCGGAGGCCCTCTGCAGTACCAAGGGGCCCAGCAGTCCAGGGGGTCTGTCCCTCAACTGGTACGAAGCCAACCAGATCAACGAATTCATGGGGCCTGAGCTGGCGCCCACCCTGCCTGACAGCAGTCTCA
Seq C2 exon
GCCCCGCCTGCTCTGAGTTCGTGGGGGCACTGGATGACCACCCTGTGTCTCGGCTGCTCTGGAGACGCCTGAAGCCATTGATCCTCGGGAAAATTCTCTTTGCACCTGACACAAACTTCACTAGGAAACTCATGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCTGGAGACCGTGCT
R:
CTGAGCCATGAGTTTCCTAGTGA
Band lengths:
220-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]