GgaEX7011362 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2832879-2833823:-
Coord C1 exon
chr28:2833562-2833823
Coord A exon
chr28:2833104-2833488
Coord C2 exon
chr28:2832879-2833018
Length
385 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCATGACCCCCACAGGAG
3' ss Score
6.78
5' ss Seq
GCAGTGAGA
5' ss Score
1.92
Exon sequences
Seq C1 exon
CCTGTCCCGCCTGCTGGCCGATGTCCGCCAGGCCCTGCACCGTGCTGATGGATGGCAGCTCCTGCACCACCTCGCCCACCTCCTGCCTGCACTGCGGGGCCGCACCGCGTCGATCTCATCCCGGCTGCTGCGGGACGATACCTTCACACGCCTCCTCCGCACCAACGCCTCGCTGCTGCCCGTGCTGCACCAGGCACTGCTGGAGGGGCTCAGCCCGCGTGATGTGAGTGTCCATGGTGCAGCCGACCTCCCACCACAGCTG
Seq A exon
GAGTGGATGAGCTCAGAGATAGATGATGCCGTGGCAGCCCTGGGTCCCTTCCTGCAGAGCGCTGAGTCCCTGCTGCAGGAGGTACCGCATCCCCACATCATCCCCACATCCCTGCCCCATCCTGGGCCCTCCCCGCAGCCCCTCTCTCTGCAGCTCTCCTCCATGGGCACCGTGGCTGAGCTGCAGCGTGAGGTTGCGCTGCTGACGGCTCCCGGTTCCTCTGCTGTGGGCGCCTTTGAGGCCGTATCGCGCATCGCCTGTGGGCACCCCGAGGGTGGGGGGCTGCAGGTGCCCTCCCTCAACTGGTATGAGGACAGCGACGTCAGTGCCTTCATGCACCGCAATGGCTCCAGGCACAGCACGGAAACCCCCGACAACGACAGCA
Seq C2 exon
GTCCCTTCTGCCAGGAGCTGCTCCGCAGCCTGGAGGCTGCCCCACTCTCACAGCTCTTCTGGCGTGGCATCAAACCCCTGTTCATGGGCAAGATCCTGTACACACCTCCCAGTCCCGCCACCGACCGCGTCATGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'4-4,'4-3,6-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.357 C2=0.170
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCGTGCTGATGGATG
R:
GACTGGGAGGTGTGTACAGGA
Band lengths:
342-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]