MmuEX6049712 @ mm10
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79998757-79999820:+
Coord C1 exon
chr10:79998757-79998837
Coord A exon
chr10:79999381-79999591
Coord C2 exon
chr10:79999681-79999820
Length
211 bp
Sequences
Splice sites
3' ss Seq
CCTGGGTGACTTCTCTACAGCTC
3' ss Score
6.47
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GCATCCCTGGATCCTGTGCTGGGTCAAGCCCAGGATTCTATGAGAAAGTTCTCAGATGCTATCAGGGATCTTGCCCAGGAG
Seq A exon
CTCCTGACACTGCCCAGCCTGATGGAGCTCCGAGCTTTGCTGCGGAGGCCCCGAGGGTCAGCTGGTTCTCTGGAGCTGGTTTCGGAGGCCCTCTGCAGTACCAAGGGACCCAGCAGTCCAGGGGGCCTGTCCCTCAATTGGTACGAAGCCAACCAGCTTAATGAGTTCATGGGGCCAGAGGTGGCCCCTGCCCTGCCTGACAACAGTCTCA
Seq C2 exon
GCCCTGCCTGCTCTGAGTTTGTGGGGACACTGGATGACCACCCTGTGTCTCGGCTGCTCTGGAGGCGCCTGAAGCCATTGATCCTCGGGAAAATTCTCTTTGCACCTGACACAAACTTCACTCGGAAGCTCATGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'10-15,'10-13,13-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTGGATCCTGTGCTGG
R:
GCCATGAGCTTCCGAGTGAA
Band lengths:
215-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types