DreEX6090540 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5651945-5653967:+
Coord C1 exon
chr11:5651945-5652037
Coord A exon
chr11:5653455-5653692
Coord C2 exon
chr11:5653828-5653967
Length
238 bp
Sequences
Splice sites
3' ss Seq
ATTCTATTTTTCCTCCTCAGATC
3' ss Score
11.06
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
AGAGACAGGCTGCAGGCAAATGCAGCTGATTTCCGGATCATCAGTCGGGCTGTGTCCTCTGCTTCTCAGGAACTGGCATCAATTATGGATGAT
Seq A exon
ATCTCTTCTCTGTCCAGTTTCTCAGAGCTGAACTCAGAGATAAGGCTTCTAACACCTGAAAACCGCTCGGTACTGCCACGCGAGAGCTTTCGAGCCTTCTCCAGAATCATGTGTGGACACCCAGAGGCAGGAGGAGAGAGAATCCCTTCATTCAACTGGTATGAAGATCAGGACATCAAATCTTTTCTGGGCAGAAACGCATCAGAGGAGACAAGTCTTGAAAATGACAACAGCACCA
Seq C2 exon
CTTCATTCTGTGAAAACTTGATCCAAAATCTGGAGTCGAACCCTCTGTCACGGATTGTATGGCGTGGCATCAAACCACTGTTCATTGGAAAGCTGCTGTACACACCAGACACGCCAATCACTCGCACAATCATGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAGGCTGCAGGCAAAT
R:
TCTGACATGATTGTGCGAGTGA
Band lengths:
231-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]