BtaEX0001714 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45167245-45168075:+
Coord C1 exon
chr7:45167245-45167455
Coord A exon
chr7:45167549-45167688
Coord C2 exon
chr7:45167959-45168075
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCACCCTGGCCCTAGGCC
3' ss Score
8.8
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
CTCCTGGAGCTGCCCAGCCTGGGAGAGCTGTGGGCCCTGCTACAGAGACCCCACAGGCCAGGTGGTCCCCTGGAGGCGGTGGCAGAAGCCCTCTGCAGTGCCAGGGGGCCCAGCAAACCAGGCGGGCCCTCCCTCAACTGGTATGAGGCCAGTGACCTGAAGGAGCTTGTGGGGCAGGAGCCAGCGCAGGCCCTGCGGGACAACAGCCTGA
Seq A exon
GCCCCACCTGCGCTGAGCTGACGGGGGGCCTGGACACCCACCCCCTGTCCCGCCTACTTTGGAGGCGCCTGAAGCCGCTGGTCCTGGGGAAAGTACTGTTCACGCCTGACACACCCTTCACCCGGCAGATCATGGCCCAG
Seq C2 exon
GTCAACCGAACTTTCCAGGAGCTGGCGCTGTTGAAGGACATCCAGGAGGTGTGGGGGCTGCTGGGACCCCAGCTCTTCAACTTCCTGAACGATAGTGCCAATGTCGCCATGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766-'8-9,'8-8,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACAGAGACCCCACAGG
R:
GAAGTTGAAGAGCTGGGGTCC
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development