DreEX0000045 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5653455-5654351:+
Coord C1 exon
chr11:5653455-5653692
Coord A exon
chr11:5653828-5653967
Coord C2 exon
chr11:5654037-5654351
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCCTGATTTTTGTCCTTTAGCTT
3' ss Score
7.92
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
ATCTCTTCTCTGTCCAGTTTCTCAGAGCTGAACTCAGAGATAAGGCTTCTAACACCTGAAAACCGCTCGGTACTGCCACGCGAGAGCTTTCGAGCCTTCTCCAGAATCATGTGTGGACACCCAGAGGCAGGAGGAGAGAGAATCCCTTCATTCAACTGGTATGAAGATCAGGACATCAAATCTTTTCTGGGCAGAAACGCATCAGAGGAGACAAGTCTTGAAAATGACAACAGCACCA
Seq A exon
CTTCATTCTGTGAAAACTTGATCCAAAATCTGGAGTCGAACCCTCTGTCACGGATTGTATGGCGTGGCATCAAACCACTGTTCATTGGAAAGCTGCTGTACACACCAGACACGCCAATCACTCGCACAATCATGTCAGAG
Seq C2 exon
GTGAACAAAACCTTTCAGGACTTCGAGATTTTAAAGGATGTTCATGAAGCTTGGCAGGAGGTCGGACCCAGAATCAAAACGTTCATGGAGAGCAGTGTAGAAATTCGGCTTCTGCAGGATCTTCTGAGAAGGCCTGAGGTGGCTGTAATAGTGAACATGCGTCTGGAAAACACCTCTTGGACGGCCTCTCGTATTGCCCGGTTCCTCTCAACGCAGGACCCAGATACACCCCGTAAGGATGGAGCTCAGCTAACCTGGTTCGATCTGTACCAGGATTTAAACAACACCTTCACCACTCTCTCAGAGCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGCAGAAACGCATCAG
R:
AATACGAGAGGCCGTCCAAGA
Band lengths:
249-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]