GgaEX0022623 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54580551-54582320:-
Coord C1 exon
chrZ:54582080-54582320
Coord A exon
chrZ:54581342-54581481
Coord C2 exon
chrZ:54580551-54580667
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCCTCTCCTCCTCAGCAC
3' ss Score
9.16
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
CTGCTGAGCATGAAGAGTTGGAGTGACATGAGGCAAGAGGTGATGTTCCTGACCAATGTGAATGCCTCAAACTCCTCTACACAGATCTACCAGGCTGTGTCACGCATTGTGTGTGGCCACCCTGAAGGTGGAGGGCTCAAGATTAAATCCCTCAACTGGTATGAGGACAATAATTACAAAGCACTGTTTGGAGGCAACAGCACTGAAGATGATGTAACTAATTTCTATGATAACTCCACAA
Seq A exon
CACCCTATTGCAATGAGCTGATGAAGAACCTGGAATCCAGCCCACTTTCCAGAATTATTTGGAGGGCTTTGAAACCTTTGCTGATTGGGAAGGTCTTGTACACTCCAGACACACCAGCCATAAGGAAGATCATGGCTGAG
Seq C2 exon
GTGAACAGGACATTCCAGGAGCTGGGAGTGTTTCGCGACCTTGGGGGGATGTGGGAGGAGATAAGCCCAAAGATCTGGACGTTTATGGAAAGTAGTCAGGAAATGGATCTGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433_MULTIEX4-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGACATGAGGCAAGAGG
R:
GCTCCTGGAATGTCCTGTTCA
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]