MmuEX6093471 @ mm10
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53089799-53092969:-
Coord C1 exon
chr4:53092729-53092969
Coord A exon
chr4:53090254-53090393
Coord C2 exon
chr4:53089799-53089915
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTCCTCCGTCTTCTTTGTAGCTC
3' ss Score
8.97
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTGTTCAGCACAAAGAGCTGGAGCGACATGCGGCAGGAGGTGATGTTTCTGACCAACGTGAACAGCTCCAGCTCCTCCACCCAGATCTACCAGGCAGTGTCCCGCATCGTGTGTGGTCACCCAGAGGGTGGGGGCCTGAAGATCAAGTCCCTCAACTGGTACGAGGATAACAACTACAAAGCCCTCTTTGGAGGGAATAACACCGAGGAAGACGTGGACACCTTCTATGACAATTCTACAA
Seq A exon
CTCCTTATTGCAATGATTTGATGAAGAACTTGGAGTCTAGTCCTCTTTCTCGAATTATTTGGAAGGCACTCAAGCCACTGCTTGTTGGAAAGATTCTCTATACACCTGACACACCAGCTACAAGGCAGGTCATGGCTGAG
Seq C2 exon
GTGAACAAGACCTTTCAGGAGTTGGCTGTGTTCCATGACCTGGAGGGCATGTGGGAAGAACTCAGCCCCCAAATTTGGACCTTCATGGAGAACAGCCAAGAGATGGACCTTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(0.9=8.5)
C2:
PF126982=ABC2_membrane_3=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTACCAGGCAGTGTCCC
R:
GGCTGTTCTCCATGAAGGTCC
Band lengths:
256-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types