GgaEX0022623 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53633946-53635715:-
Coord C1 exon
chrZ:53635475-53635715
Coord A exon
chrZ:53634737-53634876
Coord C2 exon
chrZ:53633946-53634062
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCCTCTCCTCCTCAGCAC
3' ss Score
9.16
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
CTGCTGAGCATGAAGAGTTGGAGTGACATGAGGCAAGAGGTGATGTTCCTGACCAATGTGAATGCCTCAAACTCCTCTACACAGATCTACCAGGCTGTGTCACGCATTGTGTGTGGCCACCCTGAAGGTGGAGGGCTCAAGATTAAATCCCTCAACTGGTATGAGGACAATAATTACAAAGCACTGTTTGGAGGCAACAGCACTGAAGATGATGTAACTAATTTCTATGATAACTCCACAA
Seq A exon
CACCCTATTGCAATGAGCTGATGAAGAACCTGGAATCCAGCCCACTTTCCAGAATTATTTGGAGGGCTTTGAAACCTTTGCTGATTGGGAAGGTCTTGTACACTCCAGACACACCAGCCATAAGGAAGATCATGGCTGAG
Seq C2 exon
GTGAACAGGACATTCCAGGAGCTGGGAGTGTTTCGCGACCTTGGGGGGATGTGGGAGGAGATAAGCCCAAAGATCTGGACGTTTATGGAAAGTAGTCAGGAAATGGATCTGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'17-32,'17-31,18-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGACATGAGGCAAGAGG
R:
GCTCCTGGAATGTCCTGTTCA
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]