DreEX6056975 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6166603-6169044:+
Coord C1 exon
chr14:6166603-6166843
Coord A exon
chr14:6168716-6168855
Coord C2 exon
chr14:6168928-6169044
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTATATCCTTGTTTCTAGCTC
3' ss Score
8.45
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTGGCCAGTATGAGGAGTTGGAGTGACCTGCGAAACGAGATCCTGTTTCTGACCGAAAATGCCACTGGCTCCCCAAGTCTGATGTACCAGGCTGTGTCCCGTATCGTGTGTGGACACCCTGAAGGCGGTGGCCTCAAGATCAAATCCCTCAACTGGTACGAAGACAGCAACTTCCAGGCGCTGTTTGGCAACCACAACGACAGCGATGACCAACCGGTTCCAGTCTACGACAACACAACCA
Seq A exon
CTCCATACTGTAACAGCATGATGAGGAACATGGAAGCCAGTCCCATCTCTCGAATGATCTGGAGAGCACTGAAACCTCTTCTTATGGGGAAGATTCTCTACACTCCACATAGCCCTGCAACACAGAAGATCATTCATGAG
Seq C2 exon
GTCAACAAGACATTTCAAGAGCTCGGAATTCTGCGAGATTTAGGAGGAATGTGGGAAGAAGCCAGACCGAAGGTTTGGAACTTCATGGAGAACAGCAATGAAATGGATCTAATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCGAAACGAGATCCTG
R:
CGCAGAATTCCGAGCTCTTGA
Band lengths:
252-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]