RnoEX6021835 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69912784-69915685:-
Coord C1 exon
chr5:69915445-69915685
Coord A exon
chr5:69913232-69913371
Coord C2 exon
chr5:69912784-69912900
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTGTCTTCTTTGTAGCTC
3' ss Score
9.62
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTCTTCAGCACAAAGAGCTGGAGCGACATGCGGCAGGAGGTGATGTTTCTGACCAACGTGAACAACTCCGGCTCCTCCACCCAGATATACCAGGCTGTGTCCCGAATCGTCTGTGGTCACCCAGAGGGCGGGGGCCTGAAGATCAAGTCCCTCAACTGGTACGAGGATAACAACTACAAAGCCCTCTTTGGAGGGAATGGCACCGAGGAAGACACAGACACCTTCTATGACAATTCTACAA
Seq A exon
CTCCTTATTGCAATGATTTGATGAAGAACTTGGAGTCTAGTCCTCTTTCTCGAATTATTTGGAAGGCACTCAAGCCACTGCTCATTGGGAAGATTCTGTATACACCTGACACACCAGCTACAAGGCAGGTCATGGCTGAG
Seq C2 exon
GTGAACAAGACCTTTCAGGAGCTGGCTTTGTTCCATGACCTGGAGGGCATGTGGGAAGAACTCAGCCCCCAAATTTGGACCTTCATGGAGAGCAGCCAAGAGATGGACCTTGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.043 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(8.6=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCCCGAATCGTCTGTG
R:
CTTGGCTGCTCTCCATGAAGG
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]