DreEX6033544 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51957212-51959496:+
Coord C1 exon
chr1:51957212-51957455
Coord A exon
chr1:51957918-51958057
Coord C2 exon
chr1:51959380-51959496
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCTCTTTATTCTAAGCGC
3' ss Score
6.61
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
TTGGCGAGTATGAAGAGCTGGCGCGACATGCGGAATGAGATCCTCTACCTGACGGGCAACAGCACGCAGTCACCAAACCACATGTACCAGGCCGTGTCCCGCATCGTCTGCGGCCATCCGGAGGGTGGCGGATTAAAGATCAAGTCCCTCAACTGGTTCGAAGACAATAACTACAAAGCCCTGTTCGGAAACAATGGCAACGACAGTGACAGCGAGCCCGCATCTGTTTACGACAACTCCTCCA
Seq A exon
CGCCGTACTGCAACAACCTGATGAAGGGTCTTGAGTCGAGTCCCATTTCCCGCATGATCTGGAGGGCCCTGAAACCGCTGCTCATGGGAAAGATCTTGTACACACCAGACACTCCGGCCACACAGAGGATCATACATGAG
Seq C2 exon
GTCAATAAGACGTTTCAGGAGCTCGGTGTACTCCGTGACCTCGGCGGCATGTGGGAAGAAATGAGACCCAAAATCTGGAACTTCATGGAGAACAGTGAGGAGATGGACCTCGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCCTCTACCTGACGGGC
R:
GGAGTACACCGAGCTCCTGAA
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]