BtaEX6035672 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96325226-96327915:-
Coord C1 exon
chr8:96327675-96327915
Coord A exon
chr8:96325678-96325817
Coord C2 exon
chr8:96325226-96325342
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCATCCTTTTCACAGCTC
3' ss Score
9.86
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTGTTCAGCATGAGGAGCTGGAGTGACATGCGGCAGGAGGTGATGTTTCTGACCAACGTGAACAGCTCCAGCTCCTCCACCCAGATCTACCAGGCCGTGTCCCGCATCATCTGCGGCCATCCCGAGGGCGGGGGCCTGAAGATCAAGTCCCTGAACTGGTACGAGGACAACAACTACAAGGCCCTCTTCGGAGGCAACGGCACGGAGGACGACGCTGGCACCGTCTATGACAACTCTACAT
Seq A exon
CTCCTTATTGCAATGATTTGATGAAGAATCTGGAGTCCAGTCCTCTTTCTCGCATCATATGGAAAGCTCTCAAGCCCCTGCTTGTTGGAAAGATCCTGTATACACCTGACACTCCAGTCACAAGGCGGCTTATGACTGAG
Seq C2 exon
GTGAATAAGACCTTCCAGGAACTGGCTGTGTTTCATGATCTAGAAGGCATGTGGCAAGAGCTCAGCCCCAAGATCTGGACCTTTATGGAGAGCAGCTCAGAAATGGACCTTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCACCCAGATCTACCAGG
R:
AGATCTTGGGGCTGAGCTCTT
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]