RnoEX6030622 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12757944-12759524:-
Coord C1 exon
chr7:12759314-12759524
Coord A exon
chr7:12759086-12759225
Coord C2 exon
chr7:12757944-12758060
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTCCCCTCGTGCCAGGCC
3' ss Score
8.84
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCCTGACGCTACCCAGCCTTGTGGAACTCCGGGCTTTGCTGCGGAGGCCCCGAGGGTCAGCTGGCTCTCTGGAGCTGATTTCGGAGGCCCTCTGCAGTACCAAGGGGCCCAGCAGTCCAGGGGGTCTGTCCCTCAACTGGTACGAAGCCAACCAGATCAACGAATTCATGGGGCCTGAGCTGGCGCCCACCCTGCCTGACAGCAGTCTCA
Seq A exon
GCCCCGCCTGCTCTGAGTTCGTGGGGGCACTGGATGACCACCCTGTGTCTCGGCTGCTCTGGAGACGCCTGAAGCCATTGATCCTCGGGAAAATTCTCTTTGCACCTGACACAAACTTCACTAGGAAACTCATGGCTCAG
Seq C2 exon
GTGAACCAGACCTTTGAGGAGCTGGCTCTGCTGAGGGACCTACACGAACTCTGGGGAGTACTGGGACCCCAGATCTTCAACTTCATGAATGACAGTACAAACGTGGCCATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCCAGCCTTGTGGAACTC
R:
CCAGAGTTCGTGTAGGTCCCT
Band lengths:
256-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]