MmuEX6049711 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79462126-79463573:+
Coord C1 exon
chr10:79462126-79462336
Coord A exon
chr10:79462426-79462565
Coord C2 exon
chr10:79463457-79463573
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACCGTATCCTCCCCTATCAGGCC
3' ss Score
8.56
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTCCTGACACTGCCCAGCCTGATGGAGCTCCGAGCTTTGCTGCGGAGGCCCCGAGGGTCAGCTGGTTCTCTGGAGCTGGTTTCGGAGGCCCTCTGCAGTACCAAGGGACCCAGCAGTCCAGGGGGCCTGTCCCTCAATTGGTACGAAGCCAACCAGCTTAATGAGTTCATGGGGCCAGAGGTGGCCCCTGCCCTGCCTGACAACAGTCTCA
Seq A exon
GCCCTGCCTGCTCTGAGTTTGTGGGGACACTGGATGACCACCCTGTGTCTCGGCTGCTCTGGAGGCGCCTGAAGCCATTGATCCTCGGGAAAATTCTCTTTGCACCTGACACAAACTTCACTCGGAAGCTCATGGCTCAG
Seq C2 exon
GTGAACCAGACCTTCGAGGAGCTGGCTCTGTTGAGGGACCTACACGAACTCTGGGGGGTGCTGGGACCCCAGATCTTCAACTTCATGAATGACAGTACCAACGTGGCCATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCTGGAGCTGGTTTCGG
R:
GGCCACGTTGGTACTGTCATT
Band lengths:
255-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: