BtaINT0011218 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45167549-45168075:+
Coord C1 exon
chr7:45167549-45167688
Coord A exon
chr7:45167689-45167958
Coord C2 exon
chr7:45167959-45168075
Length
270 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TCAGCACCCACCTCTTCCAGGTC
3' ss Score
7.58
Exon sequences
Seq C1 exon
GCCCCACCTGCGCTGAGCTGACGGGGGGCCTGGACACCCACCCCCTGTCCCGCCTACTTTGGAGGCGCCTGAAGCCGCTGGTCCTGGGGAAAGTACTGTTCACGCCTGACACACCCTTCACCCGGCAGATCATGGCCCAG
Seq A exon
GTGACAGTGCGAGGGGCCCTCAGTCCCAGCCTCGGCTGAGGAGGAGAGAGCCAGGCCACAGGAGAGCTCTGAGTCCCGAGACTGGCTGCTCCTGGGCTGGGTCCAGGATGCGGGGTTTGAAATGGAGGGATTGCCAGATTTCAGACAGTGCTCAGAGGTGCAGGATAGAGCATAGGGGAGAAGGCAAGAGGGGTGGGCAGGGGGCTTCACTAGAGGGAAGGGTCATGAACGGCTAAGGCTAGTGTGGACCTCAGCACCCACCTCTTCCAG
Seq C2 exon
GTCAACCGAACTTTCCAGGAGCTGGCGCTGTTGAAGGACATCCAGGAGGTGTGGGGGCTGCTGGGACCCCAGCTCTTCAACTTCCTGAACGATAGTGCCAATGTCGCCATGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACACCCACCCCCTG
R:
TGGCGACATTGGCACTATCG
Band lengths:
220-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]