RnoINT0010395 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12757944-12759225:-
Coord C1 exon
chr7:12759086-12759225
Coord A exon
chr7:12758061-12759085
Coord C2 exon
chr7:12757944-12758060
Length
1025 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTTGGCTGCCCGCTTGCAGGTG
3' ss Score
9.7
Exon sequences
Seq C1 exon
GCCCCGCCTGCTCTGAGTTCGTGGGGGCACTGGATGACCACCCTGTGTCTCGGCTGCTCTGGAGACGCCTGAAGCCATTGATCCTCGGGAAAATTCTCTTTGCACCTGACACAAACTTCACTAGGAAACTCATGGCTCAG
Seq A exon
GTAAGACGTAGGAACCAAAGAGGGGACGGTGATCTCCACAGTACCCTTAGTCAGGTGGTCACTAACAGTGAATTAGACTCAGGTGAGGGCTGGGGGGGGTGTTCAGGAGTAGAACTACTGCCTAGACTCCCTCCGTGGGGAACTGTGGGTGTGCTCAGGGTGGAGACCCAGCCTGGAATCCCTAGGTGGGGGTAGGGGTTGTAGAACAATCCCCCACCCTCTCAAGCCTCCAACCCTCCCACTCCTCTAGTTAGGGTCTTGGGGTTGGGGCGTGTAATTCACAGATAGAGCCCTTGTCCAAAATCAATACACACACACACACACACACACACACACACACACACACACACTTATTTTTTTCCAGATAGCGTTTCTCTGTGTAGTCCTGTCAGTCTTGCACTGGCTCTGTAGACCAGGCTGGCCTCCAACTCACAGAGATCTGCCTGCCTCAGCCTCCTGACACCTGGCACCCTAATTTTTTTTTTAAGAAAAAACAACTTAAAGTTATGGCTCTTTCTTTTTTTCTATTTTTTTTTAAGATTTATCTATTTATTATATACGAGTACACTGTAGCTGTCTTCGGACACACCAGAAGAGGGCATCAGATCTCATTATAGATGGTTGTGAGCCACCACATGGTTGCTGGGGTTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTACTCTTAACCACTGAGCCATCTCTCCAGCCCGGGATGGCTCTTTCTTTAGAGCCTGACTGCACAGACTTATAGTTCCAGCACTCAGAAGGAAGTTGAGGCAGGAGCATGTGGAATTCCAACCTAAGTTATAGGGTGGGACGCTGTCTCAAAATAATACTAGGGCTGGGTGTGTTGGCATTCTGTACCGGCATTTGGGGGCAGAGGCAGGCAGATCTGAGTTCCAGGTTAGCCACGGCTACGCCATGAGGCTCTATGATGGTGAAGAGGTGCAGCGACCTGGCACAGCCAGGGCAGGGCAGATATGTGGACAGGAGCCTGGCTGATCTTGGCTGCCCGCTTGCAG
Seq C2 exon
GTGAACCAGACCTTTGAGGAGCTGGCTCTGCTGAGGGACCTACACGAACTCTGGGGAGTACTGGGACCCCAGATCTTCAACTTCATGAATGACAGTACAAACGTGGCCATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGCCTGCTCTGAGTTC
R:
TGAAGCATGGCCACGTTTGTA
Band lengths:
255-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]