GgaINT1005134 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2832695-2833018:-
Coord C1 exon
chr28:2832879-2833018
Coord A exon
chr28:2832812-2832878
Coord C2 exon
chr28:2832695-2832811
Length
67 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTGATCCCCTCCCCGTGCAGGTG
3' ss Score
12.05
Exon sequences
Seq C1 exon
GTCCCTTCTGCCAGGAGCTGCTCCGCAGCCTGGAGGCTGCCCCACTCTCACAGCTCTTCTGGCGTGGCATCAAACCCCTGTTCATGGGCAAGATCCTGTACACACCTCCCAGTCCCGCCACCGACCGCGTCATGGCTGAG
Seq A exon
GTGAGTGTGCACAGTGCCGGGGGGCTGCAACCCCACTTCCCCCCCCTCTGATCCCCTCCCCGTGCAG
Seq C2 exon
GTGAACCGAACCTTCCAGGAGCTGGCAGCGCTGCGGGACACGGCTGGTGCAGCACTGGAGCTGGGAGCCCAAATCCGTGCCATTCTTAATGGCAGCCAGGAGCTGCGGGCGCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTTCATGGGCAAGATCC
R:
GCTCCTGGCTGCCATTAAGAA
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]