DreINT0000137 @ danRer10
Intron Retention
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5653828-5654351:+
Coord C1 exon
chr11:5653828-5653967
Coord A exon
chr11:5653968-5654036
Coord C2 exon
chr11:5654037-5654351
Length
69 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
CCCTCTTTCTGTTCCTCCAGGTG
3' ss Score
13.87
Exon sequences
Seq C1 exon
CTTCATTCTGTGAAAACTTGATCCAAAATCTGGAGTCGAACCCTCTGTCACGGATTGTATGGCGTGGCATCAAACCACTGTTCATTGGAAAGCTGCTGTACACACCAGACACGCCAATCACTCGCACAATCATGTCAGAG
Seq A exon
GTACTGCCCCATTCTGCCATCCTCTTACTATAAATCCGATGGCTTCTGACCCTCTTTCTGTTCCTCCAG
Seq C2 exon
GTGAACAAAACCTTTCAGGACTTCGAGATTTTAAAGGATGTTCATGAAGCTTGGCAGGAGGTCGGACCCAGAATCAAAACGTTCATGGAGAGCAGTGTAGAAATTCGGCTTCTGCAGGATCTTCTGAGAAGGCCTGAGGTGGCTGTAATAGTGAACATGCGTCTGGAAAACACCTCTTGGACGGCCTCTCGTATTGCCCGGTTCCTCTCAACGCAGGACCCAGATACACCCCGTAAGGATGGAGCTCAGCTAACCTGGTTCGATCTGTACCAGGATTTAAACAACACCTTCACCACTCTCTCAGAGCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221:ENSDART00000165385:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACACCAGACACGCCAAT
R:
CAGAAGATCCTGCAGAAGCCG
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]