HsaINT0000825 @ hg38
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1042746-1043251:+
Coord C1 exon
chr19:1042746-1042826
Coord A exon
chr19:1042827-1043040
Coord C2 exon
chr19:1043041-1043251
Length
214 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGA
5' ss Score
8.65
3' ss Seq
GTCTGGTAACCTCTCTCTAGCTC
3' ss Score
5.68
Exon sequences
Seq C1 exon
GAATCCCTGGGGTTGGCACTGGGCCAAGCCCAGGAGCCCTTGCACAGCTTGTTGGAGGCCGCTGAGGACCTGGCCCAGGAG
Seq A exon
GTACGAGGCCCCACTCATCCTCAACCCCCATGGAGGCAACGTTGGCAGGCAGCCTGCGCCGGGAGGGTCTGGGGCAGCCCGGGCACTTCCCTTGGGTGGGTTTTCAGGAGGATTAGACAGCGAGAGGGAGAGGCTGCCCCTGGCCCAGTGCCCTGCCCTGGTTAGGGCTTGGAGGTGGGATCATTGCCAGCTCCGTCTGGTAACCTCTCTCTAG
Seq C2 exon
CTCCTGGCGCTGCGCAGCCTGGTGGAGCTTCGGGCACTGCTGCAGAGACCCCGAGGGACCAGCGGCCCCCTGGAGTTGCTGTCAGAGGCCCTCTGCAGTGTCAGGGGACCTAGCAGCACAGTGGGCCCCTCCCTCAACTGGTACGAGGCTAGTGACCTGATGGAGCTGGTGGGGCAGGAGCCAGAATCCGCCCTGCCAGACAGCAGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687:ENST00000433129:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCCTGGGGTTGGCACT
R:
TCAGGCTGCTGTCTGGCA
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development