RnoINT0010393 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12759314-12760110:-
Coord C1 exon
chr7:12760030-12760110
Coord A exon
chr7:12759525-12760029
Coord C2 exon
chr7:12759314-12759524
Length
505 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTGGGTGGTTTTTTTGGCAGCTC
3' ss Score
6.15
Exon sequences
Seq C1 exon
GCATCCCTGGAGACCGTGCTGGGTCAAGCCCAGGATTCCATGAGAAAGTTCTCAGATGCTACCAGAACTGTTGCCCAGGAG
Seq A exon
GTGAGTGGCCCAAGCCAGCCTCTACCCTGGCCAGGAAGCAGTATGCAGACGGGATAGGACAGGTACTCCTGGCCGAGTCCCTGCCTAGGTCTGTGTGGTAGTGGTCTCTCCCACCGATCTGTGTGCTCCAGACACTAGGTGGGAGAATTGCGAGTTGAGGCTAGCCTGGGCTATAGATATAGAGTAAGACAATATGTCATGCAAACAAACGGGCTGGGGGTATAGCTCAGCGGGTAGAGTGCTTGTAGCTCGCTCAGTTGGTAGAGTTTGCCCAGCTTGCACGAAACCCTGGATTCTGCCCTAACTCCTTATGAACCAGGAGACATGACACACTGCTGTCCCAGCACCCAGAAGGTAGAGCAGGTCCTCCTTGACTACATAGCAAGTAAGGCCAGCCCAACCACGTGAAACCGTGTTCCAAAAACAAAAACCCAAAGCGAAACAAAAAGGTGACCCAGATGGTCTGCAGAAGGTGTCCAGCAGCCCTGGGTGGTTTTTTTGGCAG
Seq C2 exon
CTCCTGACGCTACCCAGCCTTGTGGAACTCCGGGCTTTGCTGCGGAGGCCCCGAGGGTCAGCTGGCTCTCTGGAGCTGATTTCGGAGGCCCTCTGCAGTACCAAGGGGCCCAGCAGTCCAGGGGGTCTGTCCCTCAACTGGTACGAAGCCAACCAGATCAACGAATTCATGGGGCCTGAGCTGGCGCCCACCCTGCCTGACAGCAGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCCTGGAGACCGTG
R:
TGCTGTCAGGCAGGGTGG
Band lengths:
286-791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]